Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00292 ATGTCAACCTCAAGCCAGCACCAGTTCCGGTACACTCAAACCCCATCAAAGGTCGTGCACCTTCGCAACCTTCCATGGGAGTGCACAGAAGAGGAGCTCATAGAGCTCTGTAATCCCTTTGGTAAGATCGTCAACACCAAGTGCAATGTCGGCGCCAATCGGAACCAGGCCTTTGTTGAATTTGCGGATCAGAATCAAGCCATTTCAATGATTTCATATTATGCTTCATCTTCTGAGCCTGCTCAGATTCGTGGTAAAAGTGTTTATATTCAATATTCCAATAGACATGAAATTGTCAACAACAAAAGTCCTGGAGATGTTCCTGGAAATGTTTTGCTGGTAACTATAGAAGGTGTGGAAGCTGGGGATGTGAGCATTGATGTTATTCACTTGGTGTTTTCTGCTTTTGGCTTTGTACACAAAATTGCCACATTTGAAAAGGCTGCTGGTTTCCAGGCTCTAATTCAGTTTAGTGATGCTGAGACTGCATCTTCAGCTAGGAATGCGTTGGATGGAAGAAGTATCCCCAGGTACTTGCTTCCAGATCATCTTGGTTCTTGTCACTTGCGGATTTCATACTCAGCTCATACTGATTTGAATATCAAGTTCCAATCTCATCGCAGCAGGGACTACACAAATCCTTACCTTCATGTTATTCCTACTGCTATTGAAGGAGCGGTACAGCCTGTTGTAGGTCCTGATGGGAAGAAGAGAGAACCTGAAAGTAATGTACTTTTGGCTGCGATTGAGAATATGCAGTATGCTGTCACCGTAGATGTTCTTCACACGGTGTTCTCTGCATTTGGTACTGTCCAGAAAATTGCTATATTTGAAAAGAATGGTCAAACTCAGGCACTAATTCAATACCCAGATATCACAACAGCAGCAACTGCCAGGGAAGCCTTAGAGGGGCATTGTATATATGATGGTGGCTATTGTAAGCTTCATCTATCATACTCTCGTCATACTGATCTCAATGTAAagGCTTTCAGTGATAAAAGTAGAGACTACACAATCCCAGATCCCAGCCTTCTTGCAGCTCAAGTTCCTGCAACAGCTTGGCAGAATCATCAGGCTGCTCCTATGTATCCTGTATCTGGAAGTACTGCCGCTCCAGTGCCTGGAGGACAAGTGCCATTATGGGACCCGACAACACAGGCAGTCAGACGGGGATTTGTATCAGTACCTGGTACTTTTCCTGCTCAAACTTATGCAGCACCTCCTATTCCTGCTTATGCCCAGACAGCAATGCCTGCTGCTTCCTCACCTCTTGCACAAACTAGTCCTATCGCTCATTCTATGGGAATACCAAATGGAAATTTACCTCCCGGTGGTGTTTTACCTACGGATCACGGTTCATTACCTCTAACTCAGCCTGCTTATGCCCAGACAGCAATGCCAGCCGCTTCCTCACCTATTGCTCATACTGTACATTCTACAGGTATAACTCAGCCTGGTATTCCACCTTCACCTCTAATGCAAGGATTGGCTAGGCCTGGTGGGGTGTCACATCTAGGTCACCAACCTTATTATGGCTAGAAAATGGCTCTCCTTCTTAGCTTTCTCCTTCTGGGTTTTCTCTCCATGGCCTCATATGCAAATGGGCTTGGTCATGGTGAATGGTCCAATGCTCATGCCACTTTCTATGGAGGCAGTGATGCTTCTGGAACAATGGGTGGGGCTTGTGGTTATGGAAACCTCTACAGCCAAGGTTATGGGACTAACACAGCAGCACTTAGCACTGCACTGTTCAACAATGGCTTGAGCTGGGGTGCATGTTATGAAATTAGGTGTGTAAATGACCCACAATGGTGTCTCCATGGATCCATTGTAATCACTGCTACAAATTTCTGCCCCCTAAGTGGTTGGTGTGACCACCCGAAgctccattttgatctttctcaACCTATTTTCCAGCACATTGCCCATTATAAAGCTGGCATTGTTCCTGTAATTTATAGAAgGTTGAGGTGCAGGAGAAGGGGTGGAATCAGGTTCACCATAAATGCCCATTCCTACTTCAATTTTGTGCTAGTGACTAATGTTGGAGGTGCTGGTTATGTCCATTTTGTGGCCATCAAAGGTTCAAAGACTAGATGGCAAGCCATGTCAAGGAATTGGGGCCAAAACTGGCAGAACAACTCCTACCTCAACGGACAGACCCTTTCCTTTTTGGTGACAACCAGCGACCGCCGCACCATTGTTTCATACAACGTTGCCCCAGCAAGCTGGTCTTCTGGACCAGACTTACACAGGAAGACAATTTCGTTACTGATTTA 2279 0.4506 MSTSSQHQFRYTQTPSKVVHLRNLPWECTEEELIELCNPFGKIVNTKCNVGANRNQAFVEFADQNQAISMISYYASSSEPAQIRGKSVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKAAGFQALIQFSDAETASSARNALDGRSIPRYLLPDHLGSCHLRISYSAHTDLNIKFQSHRSRDYTNPYLHVIPTAIEGAVQPVVGPDGKKREPESNVLLAAIENMQYAVTVDVLHTVFSAFGTVQKIAIFEKNGQTQALIQYPDITTAATAREALEGHCIYDGGYCKLHLSYSRHTDLNVKAFSDKSRDYTIPDPSLLAAQVPATAWQNHQAAPMYPVSGSTAAPVPGGQVPLWDPTTQAVRRGFVSVPGTFPAQTYAAPPIPAYAQTAMPAASSPLAQTSPIAHSMGIPNGNLPPGGVLPTDHGSLPLTQPAYAQTAMPAASSPIAHTVHSTGITQPGIPPSPLMQGLARPGGVSHLGHQPYYGKMALLLSFLLLGFLSMASYANGLGHGEWSNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSWGACYEIRCVNDPQWCLHGSIVITATNFCPLSGWCDHPKLHFDLSQPIFQHIAHYKAGIVPVIYRRLRCRRRGGIRFTINAHSYFNFVLVTNVGGAGYVHFVAIKGSKTRWQAMSRNWGQNWQNNSYLNGQTLSFLVTTSDRRTIVSYNVAPASWSSGPDLHRKTISLLI 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00292 758 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 558 662 IPR007112 -
Bva04g00292 758 PRINTS Expansin signature 637 650 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 620 637 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 673 694 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 737 753 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 708 729 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 597 608 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 570 584 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 661 673 IPR002963 GO:0009664
Bva04g00292 758 PRINTS Expansin signature 609 619 IPR002963 GO:0009664
Bva04g00292 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Bva04g00292 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 71 IPR000504 GO:0003723
Bva04g00292 758 Pfam Expansin C-terminal domain 663 740 IPR007117 -
Bva04g00292 758 PANTHER OS02G0789700 PROTEIN 2 462 - -
Bva04g00292 758 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Bva04g00292 758 SMART dpbb_1 575 652 IPR007112 -
Bva04g00292 758 Gene3D - 2 106 IPR012677 -
Bva04g00292 758 Pfam RRM-like domain 242 320 IPR021790 -
Bva04g00292 758 SUPERFAMILY RNA-binding domain, RBD 123 216 IPR035979 GO:0003676
Bva04g00292 758 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
Bva04g00292 758 Gene3D - 662 750 IPR036749 -
Bva04g00292 758 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 579 597 IPR007118 GO:0005576
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 645 661 IPR007118 GO:0005576
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 699 713 IPR007118 GO:0005576
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 737 751 IPR007118 GO:0005576
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 539 554 IPR007118 GO:0005576
Bva04g00292 758 PRINTS Expansin/Lol pI family signature 557 575 IPR007118 GO:0005576
Bva04g00292 758 Pfam Lytic transglycolase 575 652 IPR009009 -
Bva04g00292 758 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Bva04g00292 758 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 - -
Bva04g00292 758 Gene3D - 109 219 IPR012677 -
Bva04g00292 758 Gene3D - 241 344 IPR012677 -
Bva04g00292 758 SUPERFAMILY PHL pollen allergen 659 746 IPR036749 -
Bva04g00292 758 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Bva04g00292 758 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Bva04g00292 758 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 672 751 IPR007117 -
Bva04g00292 758 SUPERFAMILY Barwin-like endoglucanases 539 680 IPR036908 -
Bva04g00292 758 Gene3D - 527 658 IPR036908 -
Bva04g00292 758 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 462 - -
Bva04g00292 758 SMART rrm1_1 246 316 IPR000504 GO:0003723
Bva04g00292 758 SMART rrm1_1 18 91 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00292 Bva-Chr4 1766366 1775049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00292 510 746 Expansin Gene Family AT2G03090 70.612 1.29e-115 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00292 K14948 - gmx:100792308 749.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00292 04 1766366 1775049 Bva04g00292 04 1766366 1775049 ECH