Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00285 ATGTCTTCAGAAGAAGCAAATTCGTCTGAATCAGTTCCTTCCCCTTCTCCAACTATACAAGAGTTGGATGAAAATTTAGGTCGAATACTTTCAAGGCTTGTTTCCAGGATTATCCGGAATTCGTCTTCTCGCCAAGAAAATCGGGAGCAAGAGTCGGCGCGTAATCGGATCCGGGTCATTATGCTGAACGCTTCTACGGGGAATATGATCGTGATCGAGGGCCCAAGGGATCTTGAGACTATTTTCCAAGAGTTAGCTGGGAAACCTGGGGCGTCACCGGCCACCAAGGATTCAATTGAAGCCTTGCCAAGAGTGGTGGTGACTGATGAAGGTGGAGAATGTTCGATTTGCTTGGAGGATTACGAAGTTGGTACTGAAGCTTGTGAGATGCCATGTAAACATAGGTTTCATTCCACTTGTATTGAAAAGTGGTTGGGCATTCATGGAACCTGTCCACTCTGCAGATTCTTGATGCCCGTGGAGGAGATGGAGGACAAAAGTAGTAGCAGCAGCGTTGTGGAGGAGGAAAGTGGTGGTGAGAGCTTAGGGATCGATGAGGAGATTATATCTGTCAGTGTATGGGTTCAAGCCCGCAGGAGTGACTCCATGGATTTGGATATGGAGTTGGTTCCTAGCTCTGAGAATACAGATTCAGATTCACAACATGGGAATTCTGGTTCTGAACCTCATGATTCGTCCCGCAGGAGTGACTCCATGGATTTGGATACGGAGTTGGTTCCTAGCTCTGAGAATACAGATGGGAATTCTGGTTCTGAAGCTCATGATTCGTCGATAATAGAAGACATGGATTCTTG 815 0.4663 MSSEEANSSESVPSPSPTIQELDENLGRILSRLVSRIIRNSSSRQENREQESARNRIRVIMLNASTGNMIVIEGPRDLETIFQELAGKPGASPATKDSIEALPRVVVTDEGGECSICLEDYEVGTEACEMPCKHRFHSTCIEKWLGIHGTCPLCRFLMPVEEMEDKSSSSSVVEEESGGESLGIDEEIISVSVWVQARRSDSMDLDMELVPSSENTDSDSQHGNSGSEPHDSSRRSDSMDLDTELVPSSENTDGNSGSEAHDSSIIEDMDS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00285 271 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Bva04g00285 271 SUPERFAMILY RING/U-box 108 159 - -
Bva04g00285 271 Pfam Ring finger domain 113 155 IPR001841 -
Bva04g00285 271 MobiDBLite consensus disorder prediction 209 227 - -
Bva04g00285 271 PANTHER - 38 170 - -
Bva04g00285 271 MobiDBLite consensus disorder prediction 209 271 - -
Bva04g00285 271 CDD RING-H2_PA-TM-RING 113 155 - -
Bva04g00285 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 160 IPR013083 -
Bva04g00285 271 MobiDBLite consensus disorder prediction 242 262 - -
Bva04g00285 271 MobiDBLite consensus disorder prediction 1 21 - -
Bva04g00285 271 SMART ring_2 114 154 IPR001841 -
Bva04g00285 271 MobiDBLite consensus disorder prediction 164 184 - -
Bva04g00285 271 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 38 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00285 Bva-Chr4 1737035 1738156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00285 53 161 C3H Transcription Factor Family AT1G26800 47.748 3.54e-31 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00285 - - tss:122671649 142.124