Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00277 ATGGGAAAGCACATTGTGATCCCCGTAGAAGAATTAGAGTTATCAATGAAACTCAAGTACTCTGCAAGCAACAATCATGCCAAAGACGACAAAGTTGAgaaaaacgaagaagaaaTTGCAATAACTGGAGACAAAACGGAATGTCGTTTCTGTCAGGAAGAGGACTTCATCATCAAAATGGAAGCACCCTGCTTTTGCAATGGGACTCTCAAGTATGCTCACAGGAGCTGTATTCAGCGTTGGTGTAATATAAAAGGAGGAATCACCTGTGAGATTTGTGGCGAgCCACCTCTGCTGCTAGCAGAGATAGCCACAGAAGTGACAGATCGAGTTGCAGCTGCTTTGAATGATGACTGCAACTTCCATAGCCCCAGTGGAGGTGTCATTTGTGGAACTGGACTCCTCCTTTTCCTTACCCTACTTATACTGAGGGACGCATATTACTATGCGCCCCCAAAGGAGGACAAACTCTTTCACACCCTCTTCTGTGTCATGGTGGTCATCCTTGCTCCCTTCTATATCATGTCATGGTTTTATGAATGCCGGTA 548 0.438 MGKHIVIPVEELELSMKLKYSASNNHAKDDKVEKNEEEIAITGDKTECRFCQEEDFIIKMEAPCFCNGTLKYAHRSCIQRWCNIKGGITCEICGEPPLLLAEIATEVTDRVAAALNDDCNFHSPSGGVICGTGLLLFLTLLILRDAYYYAPPKEDKLFHTLFCVMVVILAPFYIMSWFYECR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00277 182 Pfam RING-variant domain 48 93 IPR011016 GO:0008270
Bva04g00277 182 SMART ringv_2 47 94 IPR011016 GO:0008270
Bva04g00277 182 CDD RING_CH-C4HC3_MARCH 48 94 - -
Bva04g00277 182 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 101 IPR013083 -
Bva04g00277 182 ProSiteProfiles Zinc finger RING-CH-type profile. 40 100 IPR011016 GO:0008270
Bva04g00277 182 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 21 178 IPR033275 -
Bva04g00277 182 SUPERFAMILY RING/U-box 45 95 - -
Bva04g00277 182 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 21 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00277 Bva-Chr4 1698926 1700684 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00277 31 95 C3H Transcription Factor Family AT1G50440 36.765 8.96e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00277 - - cam:101504331 160.229