Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00273 ATGGATACTGAAGAGAACTTATGTGCTAACACCTGGGCAAGGTCTTCATTAACTTGTCCTGGAACTGGATTGCAGACAAATTTATCCCCAGATCCTTCCGCTTTCCCAGATTTTAGTTTGCAGCATAATCAACTGAAATGGGAAGATTCCTCTAGTTCTGATTATGGGATCAGGATTGAAGCACCTTTCAAAGAAATCAACCAACTGCCAGTTGATTCCAACACTGAGATGAAGATTTCTGATCAAGAAAATTGTCAGATGAGTGAGGATGCATTACAACCCAGCAAAATCCAAGGTTGGGATCCCAGAATGATGCTGAATAATCTTTCTTTCCTGGAGGAAAAGATTCATCAGCTCCAGGATCTTGTCCATTTGATAGTTGGTCGAAAAGACCAACAATTTGGACAACCCGATGAACTTGCTACTCAGGAACAGCAGCTCATCACAGCTGATCTTACATCAATTATTGTTCAGTTGATCTCTACTGCCGGTAGTCTTCTCCCATCCGTGAGGCATACCCTTACAACCACTAGTCCATCTATTGCACAGCTTAGTCAGCTTCCtggtttttcctttccttctggATCGGGGCCAAGTAATAGTCTTCAGCCACAACTTAATGGTGGAAATAAGATGTCTGATCAGTCTAACCAGATTGATCTAACTAATAATGGCGAAATGGAGAAAAACTACAATGTGGAAGAACATGAACATAAAGACGAAcacaaagaagaagaggataTGGAGGAGGGTGAGAACCTTCCACCTGGTTCCTACGAGATTTTGCagttagaaaaagaagaaattctcGCACCTCATACCCATTTCTGTACAATTTGTGGGAAGGGATTCAAGAGAGATGCAAATCTTCGGATGCACATGCGTGGCCATGGTGACGAATACAAAACCCCAGAAGCACTTGCAAGACCTCATAAAGAATCTGGGTCCGAACCAAAGCTTATCAAGAGGTATTCCTGCCCTTATGCTGGCTGCAAGCGTAACAAGGATCACAAGAAGTTTCAACCACTGAAGACTATCTTGTGCGTCAAGAACCATTACAAAAGAACACACTGTGACAAGAGTTACACTTGCAGCAGATGTCACACGAAGAAATTCTCGGTCTTGGCAGATCTCAAGACTCACGAAAAGCATTGTGGTAAGGACAAATGGCTTTGTTCATGTGGCACGACATTTTCGAGGAAAGACAAGCTTTTCGGACACATTGCTCTGTTCCAAGGCCATACTCCAGCCATTCCCTTGGATGATGCTAAAGGGTCAGCTGCGCCACCTGATTCAGAAAGCAAAGAACACAACAGCAAGGTAGCAAGTCTAAACTTGAGTTTTGGATCAAATACTTTTAGTGGAGATGGAGTTCAGAACATGATGGATATCAAAGATAATGTTGATGAtcccataaattatttttcatccttGAACTTTGATACCTCTAACTTCAATGGGTTTAGTGAATTCCTCCGACCGACTTTTGAGGACTCGGAGGCTTCATTATCATTTCTCATGCCTGGATCTTTTAACTACAATCCCAAAGCTGGAGCAGAATCAAGTTCTGATAATTTATA 1580 0.4032 MDTEENLCANTWARSSLTCPGTGLQTNLSPDPSAFPDFSLQHNQLKWEDSSSSDYGIRIEAPFKEINQLPVDSNTEMKISDQENCQMSEDALQPSKIQGWDPRMMLNNLSFLEEKIHQLQDLVHLIVGRKDQQFGQPDELATQEQQLITADLTSIIVQLISTAGSLLPSVRHTLTTTSPSIAQLSQLPGFSFPSGSGPSNSLQPQLNGGNKMSDQSNQIDLTNNGEMEKNYNVEEHEHKDEHKEEEDMEEGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPEALARPHKESGSEPKLIKRYSCPYAGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCSRCHTKKFSVLADLKTHEKHCGKDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPLDDAKGSAAPPDSESKEHNSKVASLNLSFGSNTFSGDGVQNMMDIKDNVDDPINYFSSLNFDTSNFNGFSEFLRPTFEDSEASLSFLMPGSFNYNPKAGAESSSDNL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00273 526 ProSiteProfiles Zinc finger C2H2 type domain profile. 275 302 IPR013087 -
Bva04g00273 526 SMART c2h2final6 275 297 IPR013087 -
Bva04g00273 526 SMART c2h2final6 324 357 IPR013087 -
Bva04g00273 526 SMART c2h2final6 362 384 IPR013087 -
Bva04g00273 526 MobiDBLite consensus disorder prediction 229 245 - -
Bva04g00273 526 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 42 510 - -
Bva04g00273 526 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 42 510 IPR044300 GO:0010044|GO:0010447
Bva04g00273 526 Gene3D Classic Zinc Finger 259 329 - -
Bva04g00273 526 ProSitePatterns Zinc finger C2H2 type domain signature. 277 297 IPR013087 -
Bva04g00273 526 MobiDBLite consensus disorder prediction 186 228 - -
Bva04g00273 526 SUPERFAMILY beta-beta-alpha zinc fingers 274 299 IPR036236 -
Bva04g00273 526 MobiDBLite consensus disorder prediction 186 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00273 Bva-Chr4 1683842 1686541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00273 243 524 C2H2 Transcription Factor Family AT1G34370 69.444 2.60e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g00273 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00273 - - gmx:100170687 729.554