Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00263 ATGGACGAAAACGGAGCTGGAGCAAAACAAGTAGAACGAAAAGAATTCCGCTGCTCAGCAACGCCAACGAAAACAGACACTTCTTTATCTGCACAGCTGGGGAACATAAACTCTCGGCGCTCTCGGAGCCACCGGAAATCGGCCATGGCCGCTTTCTCCTCCGGCAATTCCTTTACAACTTCTTCCTCAGCTTTCCCTCGCAAACAGTTGGATTTCTCGCCGGATTATTCACCCAGAATCTCCCTCTCGCCCGATCAGATGAAGTACTGCTCTCAAGCTCTTGGatttttcaagaagaaaacacCCTCTGAGATTACTCAAGAGTTTGCTCACTTACAGGCAAACAGGATAACACCAAGTGAGATGAGCAGAAGATGTATTGTGGCTCTGGACAGCGTAAATGTCCACAAAAATCGTTACAGAAATGTCTTACCATttGACAACAATAGGGTTGTTCTCCGATCAAGTAAAGATTATAGACCCACAGGAGAGAGCTATGTCAACGCAAGCCTCATTTCGACCTCTTCCTCTGGAAGTGTTTCTCAGTTTATAGCTACACAAGGCCCATTACACCACACTTATGAGGATTTCTGGGAAATGGTTATGCAATATAACTGCCCTGCAATTGTGATGCTTACTAGGTTGGTGGACCATTACAAGCTGTTAAAGTGTGGAGATTATTTTCAAGCTGAAGATGGACCTAGAGAATTTGGTAATATATCTATTATCAGTAAATGGATGGAAACTACTGAAACTTCTTTGGTGCTGCGCCATTTGGAGGTGAAGCATAACGAGCAAGAAGATCCACCCATAtctgtttttcatattcagTATCCTGAATGGCCTGACCATGGAGTTCCCAAAGATACATCCGTTGTGcgtgaaattttgaaaagattatACCATTTACCACCAAATCTTGGTCCAATAGTGGTGCACTGCAGTGCAGGTATTGGGAGAACTGGAACATACTGCACAATACACAATACAATTCAGAGAATCCTTGCTGGTGATATGTCTGCTTTGGATCTTGCTAATACCATCGCTGTATTTAGGTCCCAGCGTATTGGAATGGTTCAAACACAGgaCCAGTATTCTTTCTGCTACAAAACTATCATAGAAGAATTGGAAGACCTTGTATCTTATCAGCAATA 1154 0.4159 MDENGAGAKQVERKEFRCSATPTKTDTSLSAQLGNINSRRSRSHRKSAMAAFSSGNSFTTSSSAFPRKQLDFSPDYSPRISLSPDQMKYCSQALGFFKKKTPSEITQEFAHLQANRITPSEMSRRCIVALDSVNVHKNRYRNVLPFDNNRVVLRSSKDYRPTGESYVNASLISTSSSGSVSQFIATQGPLHHTYEDFWEMVMQYNCPAIVMLTRLVDHYKLLKCGDYFQAEDGPREFGNISIISKWMETTETSLVLRHLEVKHNEQEDPPISVFHIQYPEWPDHGVPKDTSVVREILKRLYHLPPNLGPIVVHCSAGIGRTGTYCTIHNTIQRILAGDMSALDLANTIAVFRSQRIGMVQTQDQYSFCYKTIIEELEDLVSYQQ 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00263 384 ProSiteProfiles PTP type protein phosphatase domain profile. 105 375 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 309 327 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 271 288 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 342 357 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 165 172 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 358 368 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 PRINTS Protein tyrosine phosphatase signature 183 203 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 70 378 IPR029021 -
Bva04g00263 384 SMART ptp_7 272 374 IPR003595 -
Bva04g00263 384 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 294 366 IPR000387 GO:0016311|GO:0016791
Bva04g00263 384 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 62 381 - -
Bva04g00263 384 CDD PTPc_plant_PTP1 166 369 - -
Bva04g00263 384 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 62 381 - -
Bva04g00263 384 MobiDBLite consensus disorder prediction 1 20 - -
Bva04g00263 384 Gene3D Protein tyrosine phosphatase superfamily 85 378 IPR029021 -
Bva04g00263 384 MobiDBLite consensus disorder prediction 21 38 - -
Bva04g00263 384 ProSitePatterns Tyrosine specific protein phosphatases active site. 312 322 IPR016130 GO:0016311|GO:0016791
Bva04g00263 384 SMART PTPc_3 104 377 IPR000242 GO:0004725|GO:0006470
Bva04g00263 384 MobiDBLite consensus disorder prediction 1 64 - -
Bva04g00263 384 MobiDBLite consensus disorder prediction 47 64 - -
Bva04g00263 384 Pfam Protein-tyrosine phosphatase 134 374 IPR000242 GO:0004725|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00263 Bva-Chr4 1598275 1602908 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00263 53 381 Protein tyrosine phosphatase (PTP) family AT1G71860 65.861 1.82e-158 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00263 - - gmx:548044 514.227