Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00249 ATGGCCTCCTCTCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGGTGCTACAGAGGAGCAGCTTATTGAAATCTGCCAGGAGGTCGGGCCTGTTGTTTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAACCAAAAGGTTATGGTTTCTGTGAATATAAGGATGAAGAGACAGCTCTAAGTGCTCGTCGTAACCTTCAAGGCTATGAGATCAATGGGCGACAGTTACGTGTTGATTTTGCTGAAAATGATAAAGGTGTTGATAGAAATCGAGAACAGGGACGTGGTGGGCCTGGACTAGCAGCAAATGCTGACCCTCAGAAACAGGTAGGTGGACCAGCTGCCCATGGAGATGCTGTTCACCATCAGCCTATTGGTCTTCATATTGCCATCACTGCTGCAGCTGCCATGGCAGCAGCTTTAGGTGGTGCTCAGTCTGGCATCCAGTCAAATCAAAATGGTTTGCAAAGTCAGTCAGCATTAGCACATGATCCTTTAACTCTGCATCTGGCCAAAATGTCCAGGAGTCAGTTAAATGATATGATCTCTGAGCTGAAGGCAATGGCTACACAACACAAGGAACTAGCTCGCCAGCTACTACTTTCACGACCGCAGTTGCCTAAGGCCCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAATGTTGCAAATGCCAAATCTTAGTCAGGGTGCAGGTCAAACCTCACAGCCTCCAGTGAATGAAGGTCAGCAGGCAGCATTTCAAGGGCTTCCTCCTCATCCACAAAGCAAGCTGCAGTCTGGCGTGATCCCCAACATTCAAGAAGCTCAAGTCAACACCATAGCTCATAATCCCCATCATTCAAGAAGCTCACATCCAAAGCCACCCGTGCAGCCTCGGGTTCAACTTCCACAACATCCAAGCAACCTTGTTGCACAGCAGAGCACATTGTCAGGGCAATCTAATTTAACACTTCCTTCAATGCGTCCCCAGTCTATGGCAAGTTTGTCTATTAGGCCACCAACTCAGCTGCCAATCTCTACTTCTTTGAACCAGCAAATGCAATCCTCTATGTTACAGCATTCGGGGCATGTTGGAAACCCAAGCGCAGCACATAATATTCAGACCATTCGTCCAGATGCAAGCTTTCAGCTTGGCCCCTCCATATCAGGAGGTATTTCTCAGCCAATTAGTAAAGAAGCAGATAGATCAGCCAGAGCTCTTGTACTTTCAAATTGGGCCAAGAGAAGTAGTACTCATCAAAACATGCCCTTGATATCATTAGATAAGACAAATGTAGTTCAGGATTCTTCAGAACCAGTTAATCGTCCTGCTAAGCTGATGAAATTGGATGAAGGAAGGACCACCTCTTTTTCTGCTGGGCTTACGGATGTGCCTGCCAACAATGGATTATCCCAAGGTCTTGGAAGTAGCTCATTGCCTGCAAATCCAACTTCTAAAACGGAAATGCAGTACTCTGAGCAACAACCATCTTCTCAGTCCCAGCTTCCACCTGATGTGGAGTCCATTTTACTGCAACAAGTGTTGAATCTAACACCGGAGCAGTTGAGCTCTTTGCCACCAGAGCAGCAGCAACAGGTCCTTCAGCTCCAGCAGGCTCTTCGCCGTGATCAGATCCAGTCCTA 1640 0.4689 MASSQHRCVFVGNIPYGATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGVDRNREQGRGGPGLAANADPQKQVGGPAAHGDAVHHQPIGLHIAITAAAAMAAALGGAQSGIQSNQNGLQSQSALAHDPLTLHLAKMSRSQLNDMISELKAMATQHKELARQLLLSRPQLPKALFQAQIMLGMVTPQMLQMPNLSQGAGQTSQPPVNEGQQAAFQGLPPHPQSKLQSGVIPNIQEAQVNTIAHNPHHSRSSHPKPPVQPRVQLPQHPSNLVAQQSTLSGQSNLTLPSMRPQSMASLSIRPPTQLPISTSLNQQMQSSMLQHSGHVGNPSAAHNIQTIRPDASFQLGPSISGGISQPISKEADRSARALVLSNWAKRSSTHQNMPLISLDKTNVVQDSSEPVNRPAKLMKLDEGRTTSFSAGLTDVPANNGLSQGLGSSSLPANPTSKTEMQYSEQQPSSQSQLPPDVESILLQQVLNLTPEQLSSLPPEQQQQVLQLQQALRRDQIQS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00249 546 Pfam Hinge domain of cleavage stimulation factor subunit 2 161 228 IPR025742 -
Bva04g00249 546 Gene3D - 148 230 - -
Bva04g00249 546 MobiDBLite consensus disorder prediction 232 262 - -
Bva04g00249 546 Gene3D - 502 543 IPR038192 -
Bva04g00249 546 SMART rrm1_1 8 81 IPR000504 GO:0003723
Bva04g00249 546 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Bva04g00249 546 CDD RRM_CSTF2_CSTF2T 9 83 - -
Bva04g00249 546 MobiDBLite consensus disorder prediction 422 505 - -
Bva04g00249 546 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 2 542 - -
Bva04g00249 546 MobiDBLite consensus disorder prediction 454 505 - -
Bva04g00249 546 MobiDBLite consensus disorder prediction 84 121 - -
Bva04g00249 546 Pfam Transcription termination and cleavage factor C-terminal 509 541 IPR026896 GO:0031124
Bva04g00249 546 MobiDBLite consensus disorder prediction 422 437 - -
Bva04g00249 546 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Bva04g00249 546 Coils Coil 180 200 - -
Bva04g00249 546 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Bva04g00249 546 Gene3D - 1 117 IPR012677 -
Bva04g00249 546 MobiDBLite consensus disorder prediction 280 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00249 Bva-Chr4 1528091 1535197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00249 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 2.92e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00249 K14407 - gmx:100806489 644.425