Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00240 ATGGCGATGGCGATTTCTTCACCGATGGCTCAGCCTGCTGCACCGGTGGTTCCGGCGGCGGGAATGCCTGGAGGAACATTTGCAAGTGCATCGCTGTACGTTGGCGATCTTGATGCCAATGTGAACGAGGGACAACTGTATGATCTGTTCAGCCAGGTGGCTCAGGTTATCTCCATTAGGGTTTGCAGGGATCAGACAAAACGATCATCTCTCGGTTACGCTTATGTCAACATTGCCACCGCTCAAGAGGCTTGTCATGCTATGGAAGTTCTGAACTTCACTCCTCTAAATGGGAAACCCATTCGTATTATGTTTTCTCATCGAGATCCTAGCATCCGGAAAAGTGGATTTGCTAATGTTTTCATCAAGAACCTTGACTCTTCAATTGACAACAAGGCATTGCATGATACTTTTGCTGCCTTTGGCACTGTACTTTCCTGCAAGATAGCTGTTGATAACAATGGTCAGTCAAAGGGGTATGGTTTTGTACAGTTTGACAACGAAGAATCTGCACAAAATGCCATCAAACAGTTGAATGGCATGCTGTTAAATGACAAGCAAGTTTATGTTGGACTCTTTGTTCGTCGCCAAGAAAGGGCTAGATCAAACGGATCACCAAAGTtcactaatatatatgtgaaaaatTTTTCTGATTCAACGACTGATGAAGACCTTAAGAAACTTTTTACCCCATATGGTACCATAACTAGTGCTGTTGTCATGAAAGATGGAAATGGGAAGTCTAGatgttttggttttgtgaATTTCCAGAGTCCAGATTCAGCAGCTTCTGCTGTTGAGAAGGTAAATGGGACTACTGTTAATGATGACAAGATTTTATATGTGGGAAGAGCTCAGAGGAAAGTAGAGAGAGAGTCAGAGTTGAAAGCCAAGTTTGAGCATGAAAGAATTAGTAGATATGAGAAAATGCAAGGTGCTAACTTATACCTGAAAAATCTTGATGATAACATCAACGACGAAAAGCTCAAGGAGCTATTTTCTGAGTTTGGAACAATAACATCATGCAAGGTCATGCTTGATTTACACGGGCGTAGCAAGGGCTCTGGTTTTGTGGCCTTTTATACTCCCGAGGAAGCAAGTAAAGCTttaaatgaaatgaatggAAAGATGATTGGGCGGAAACCTCTCTATGTTGCTGTGGCCCAGCGTAAAGAAGAGAGGAAGTCTCGTCTGCAGGCACAGTTTGCTCAAATTCGAGCACCCAGTGGAATTACACCTCTACCTGCAGGAATTCCTGGTTTTCATCCAGGAGCACCTAGAATTGCTCCTCAACAGTTGTATTTTGGTCAGGGTACACCTGGTTTAATGCCACATCAACCTGGGGGGTTTGGTTTTCAGCAGCAACTCTTACCTGGAATGCGGCCTGGTGTTGCTCCTAATTTCATTATGCCATACCACCTTCAGAGACAAGGTCAACCTGGGCAGAGGATGGGTGTTCGACGGGGTGGAAATCTCCAACAAGTCCAGCAGAACCAGATGCTGCATCGTAACTCCAACCAAGGGTATAATCGATATATGGGCAACAGTCGGAATGGTATGGATTCATCTGTCATTCCCCAAGGTCTAGTGGGTCCTATGATGCCATTGCCCTTTGATGGTTCTGGTGTTGCTGCACCTCCTATTGATAATCAGCGACCTGGGGGATTGGCCTCAGCATTGGCTTCTGCTACCCCAGAAAATCAGCGTATGATGCTGGGTGAACATCTATACCCGCTTGTGGAGCGACTTTCACCCAACCAGACAGCCAAGATAACGGGGATGCTGTTGGAAATGGACCAGTCTGAGGTGATCCATCTCATTGAATCTCCTGAAGATCTGAAGATAAAAGTGTCTGAGGCAACGCAAGTCCTTCGCGAAGCTGCATCAGGTTCTGATGTTAATGACCAGCTTGGCTCGTTATCACTGAATGAATG 1934 0.4436 MAMAISSPMAQPAAPVVPAAGMPGGTFASASLYVGDLDANVNEGQLYDLFSQVAQVISIRVCRDQTKRSSLGYAYVNIATAQEACHAMEVLNFTPLNGKPIRIMFSHRDPSIRKSGFANVFIKNLDSSIDNKALHDTFAAFGTVLSCKIAVDNNGQSKGYGFVQFDNEESAQNAIKQLNGMLLNDKQVYVGLFVRRQERARSNGSPKFTNIYVKNFSDSTTDEDLKKLFTPYGTITSAVVMKDGNGKSRCFGFVNFQSPDSAASAVEKVNGTTVNDDKILYVGRAQRKVERESELKAKFEHERISRYEKMQGANLYLKNLDDNINDEKLKELFSEFGTITSCKVMLDLHGRSKGSGFVAFYTPEEASKALNEMNGKMIGRKPLYVAVAQRKEERKSRLQAQFAQIRAPSGITPLPAGIPGFHPGAPRIAPQQLYFGQGTPGLMPHQPGGFGFQQQLLPGMRPGVAPNFIMPYHLQRQGQPGQRMGVRRGGNLQQVQQNQMLHRNSNQGYNRYMGNSRNGMDSSVIPQGLVGPMMPLPFDGSGVAAPPIDNQRPGGLASALASATPENQRMMLGEHLYPLVERLSPNQTAKITGMLLEMDQSEVIHLIESPEDLKIKVSEATQVLREAASGSDVNDQLGSLSLNE 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00240 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 383 IPR000504 GO:0003723
Bva04g00240 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Bva04g00240 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Bva04g00240 644 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Bva04g00240 644 CDD RRM3_I_PABPs 208 288 - -
Bva04g00240 644 Gene3D - 26 118 IPR012677 -
Bva04g00240 644 SUPERFAMILY RNA-binding domain, RBD 205 294 IPR035979 GO:0003676
Bva04g00240 644 CDD RRM4_I_PABPs 312 390 - -
Bva04g00240 644 Gene3D - 551 629 - -
Bva04g00240 644 SUPERFAMILY PABC (PABP) domain 496 629 IPR036053 GO:0003723
Bva04g00240 644 SUPERFAMILY RNA-binding domain, RBD 309 402 IPR035979 GO:0003676
Bva04g00240 644 CDD RRM1_I_PABPs 31 110 - -
Bva04g00240 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Bva04g00240 644 Gene3D - 193 296 IPR012677 -
Bva04g00240 644 SUPERFAMILY RNA-binding domain, RBD 30 198 IPR035979 GO:0003676
Bva04g00240 644 CDD RRM2_I_PABPs 116 191 IPR045305 -
Bva04g00240 644 Gene3D - 297 402 IPR012677 -
Bva04g00240 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 287 IPR000504 GO:0003723
Bva04g00240 644 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 552 629 IPR002004 GO:0003723
Bva04g00240 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Bva04g00240 644 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 625 IPR006515 GO:0003723
Bva04g00240 644 PANTHER RNA BINDING PROTEIN 22 632 - -
Bva04g00240 644 SMART rrm1_1 31 104 IPR000504 GO:0003723
Bva04g00240 644 SMART rrm1_1 119 191 IPR000504 GO:0003723
Bva04g00240 644 SMART rrm1_1 314 386 IPR000504 GO:0003723
Bva04g00240 644 SMART rrm1_1 210 283 IPR000504 GO:0003723
Bva04g00240 644 SMART rrm2_1 210 282 IPR003954 GO:0003676
Bva04g00240 644 SMART rrm2_1 119 191 IPR003954 GO:0003676
Bva04g00240 644 SMART rrm2_1 314 386 IPR003954 GO:0003676
Bva04g00240 644 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 195 IPR000504 GO:0003723
Bva04g00240 644 Gene3D - 119 192 IPR012677 -
Bva04g00240 644 SMART poly_2 564 627 IPR002004 GO:0003723
Bva04g00240 644 PANTHER POLYADENYLATE-BINDING PROTEIN 22 632 - -
Bva04g00240 644 Pfam Poly-adenylate binding protein, unique domain 560 624 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00240 Bva-Chr4 1477911 1483186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00240 26 638 Eukaryotic Initiation Factors Gene Family AT1G71770 58.703 0.0 711
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00240 K13126 - gmx:100783163 1046.96