Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00237 ATGAGAGGAAAAGCTACAGCACTTGTTAAACTTTCTAACTCTCTATATTCTCCTATTAAACGTTACCCAATCACAGAACTAGCACCACCCATTTCTGGTTTTCAAGCAATTCGTCCTCTTTCAACCTCCTCCTCTCCCACGACTACCATTGTTGAAGAGCCAAACAAGACGCCACCGAAGTCCCAAAGGGATGCACTGCTTCTAGAGAAGTTCAGGCTTAGAAAGCTAAAAGGTTCTTCTGAAACAGTACTAGGAAACCCCCAAGCAGCGTCAAATTCTACTGGAGAGAAGGTGGTTGAAAAGGGTTTGCAGAATGAGGGTGAACCCCCTCAGCAAGTTACCAAATTCGAGGATTTGGGTCTAAGCGAGGAGCTTATTTTGGCTTTGAAAGTCGTTGGTATTTTTGCTCCCAGTGATATTCAATGTGTGGGAATTCCAGCTGTGTTGGATGGCAAGAATGTCTTGTTGAGTTCAGAATCTGGGTCTGCCAGGACATTGGCCTACTTGTTGCCTCTTATTCAGCTGCTGAGACGAGATGCTAAACTTGGTAGTTCAAAGTCTCAGCAACCCCCGGCCATTCTGCTTTGTGCCTCAGAGGAGAAATCTGAAgagTGTTTTAATGTTGCAAAACTTATCATCCATAATGCAGAAGTGAAGTCTGCAAAGGATGGAACTTCGCCACAGAATGAGTTGGGCCTAGTAATTGGAACTCCTAGTGAAATTGTTCGTTACATTGAAGAGGGGACCGTCATTCCTAATGAAATAAGATACTTGGTATTGGATGATGCAGACTGCATGTTTCAGGGCGGCCTAGGTCCTGAAATTCACAAGGTCATAAAACCTTTAAATGATGGTACTTCAGAATCAACTTCGAAAGGATTGCAAACTGTTTTGATCACTTCAACAATATCAGAGATCTTGGGTGAACAGTCTTCAGTTGTCAAGCGCCTTGAGCATGATCATGGAGGACAAATTTTGTCAATGGTGTTAGAGATGGATCAAACTGAAGTGTTTCATATCACAGAGTCCTTGGATGCTCTAAGGAAAAAACTGGCTGAGGCAATGGATTCCTTGTGTGTTGACTG 1085 0.4313 MRGKATALVKLSNSLYSPIKRYPITELAPPISGFQAIRPLSTSSSPTTTIVEEPNKTPPKSQRDALLLEKFRLRKLKGSSETVLGNPQAASNSTGEKVVEKGLQNEGEPPQQVTKFEDLGLSEELILALKVVGIFAPSDIQCVGIPAVLDGKNVLLSSESGSARTLAYLLPLIQLLRRDAKLGSSKSQQPPAILLCASEEKSEECFNVAKLIIHNAEVKSAKDGTSPQNELGLVIGTPSEIVRYIEEGTVIPNEIRYLVLDDADCMFQGGLGPEIHKVIKPLNDGTSESTSKGLQTVLITSTISEILGEQSSVVKRLEHDHGGQILSMVLEMDQTEVFHITESLDALRKKLAEAMDSLCVD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00237 361 SUPERFAMILY PABC (PABP) domain 305 356 IPR036053 GO:0003723
Bva04g00237 361 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 306 IPR027417 -
Bva04g00237 361 SMART ultradead3 133 320 IPR014001 -
Bva04g00237 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 10 359 - -
Bva04g00237 361 MobiDBLite consensus disorder prediction 38 56 - -
Bva04g00237 361 MobiDBLite consensus disorder prediction 38 61 - -
Bva04g00237 361 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 10 359 - -
Bva04g00237 361 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 114 142 IPR014014 GO:0003724
Bva04g00237 361 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 321 IPR014001 -
Bva04g00237 361 Pfam DEAD/DEAH box helicase 139 304 IPR011545 GO:0003676|GO:0005524
Bva04g00237 361 Pfam Poly-adenylate binding protein, unique domain 312 356 IPR002004 GO:0003723
Bva04g00237 361 SMART poly_2 299 361 IPR002004 GO:0003723
Bva04g00237 361 Gene3D - 85 315 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00237 Bva-Chr4 1469094 1471445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00237 113 312 Eukaryotic Initiation Factors Gene Family AT3G19760 22.010 6.90e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00237 - - gmx:100800575 384.415