Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00226 atgaaacatggTGCGCAAAACCCTAGCCAAGGGTCAGCGGGCATAGATATAAAGTGCAAACTCAGAAACCCTGAAATTTCAGATCCAAGTGGAAGGCTAAGAGCTTCGGCGGCAATCAGCTTCTGCGCTGTAAACAATTCCTCAACCACAAAAATGTCGTTAGTTACAAACGAAGATTTCCAGCATATTCTCCGTGTGCTGAACACCAACGTTGATGGGAAGCAGAAGATTATGTTTGCCCTTACCTCAATCAAAGGTATTGGCAGGCGGTTTGCCAACATTGTCTGCAAGAAAGCCGATGTCGACATGAACAAAAGAGCTGGTGAGTTGAGTGCTGCCGAGCTGGATAACCTCATGACTGTGGTTGCTAACCCTCGTCAGTTCAAGATCCCAGACTGGTTTTTGAACAGAAAGAAGGATTACAAGGATGGTAAATATTCCCAGGTTGTCTCCAATGCACTGGACATGAAGCTCAGGGATGATTTGGAGCGATTGAAGAAAATCAGAAACCATCGTGGTTTGAGGCACTACTGGGGCCTTCGTGTTCGTGGCCAGCATACTAAGACTACTGGCCGTAGGGGGAAGACTGTTGGTGTGTCTAAGAAGCGTTG 611 0.4615 MKHGAQNPSQGSAGIDIKCKLRNPEISDPSGRLRASAAISFCAVNNSSTTKMSLVTNEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANIVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00226 203 SUPERFAMILY S13-like H2TH domain 64 203 IPR010979 GO:0003676
Bva04g00226 203 PANTHER 40S RIBOSOMAL PROTEIN S18-RELATED 47 203 - -
Bva04g00226 203 Hamap 30S ribosomal protein S13 [rpsM]. 63 203 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva04g00226 203 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 47 203 - -
Bva04g00226 203 Gene3D 30s ribosomal protein s13, domain 2 143 193 IPR027437 -
Bva04g00226 203 Pfam Ribosomal protein S13/S18 65 193 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva04g00226 203 ProSitePatterns Ribosomal protein S13 signature. 172 185 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Bva04g00226 203 Gene3D - 52 131 - -
Bva04g00226 203 ProSiteProfiles Ribosomal protein S13 family profile. 66 196 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00226 Bva-Chr4 1386356 1388361 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00226 52 203 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 96.053 1.05e-108 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00226 K02964 - qsu:112019340 298.901