Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00201 ATGAAGACAATGAAGATTCAAAGGAAGACGCCGTCTCAACTTCAGGCTCTTGATAATTTCTATGCAGAGGAGAAGTATCCAACAGAGAGAGCAATTAAAGACTATGCTGCTGCTTTGGGATTGACATACAAGCAAGTTCGAGATTGGTTTGTTGAAAAAAGGAGAAGGGGGAAGAGGGAAAATGGAGTGATTTTACAGTTGCATTCTTCTTTGGGAAAGAAACTCCTTCCTCGGAGTGGACAAAATTTCTTGGGAGTTGCTGCTGCTATAGGACATGTACAAGATCTGTCAAATCAGAAAGCTGATGCTAATTCATCTTCAAGGTACAATAGAGCAATGACGAGGAATgttagaaaaaagaacaaacgTGAATGTTTGCAGGAGTTGGTACCATCAGACTACATTCTAACAAAGGTTTTCCGGAAGGATGGTCCTCCTCTTGGTCTGGAATTTGACTCTCTTCCTTCTAGATCCTTTCTCGATGATAGTGGTCCTAAGATTTCTCTTCCTGCATGTCAAGAGGATCGAGGACCAGTGAAAAGGAGGAAGgcGTCAGAGAATGCAATTGAAACCCACCATGATGCTAATGTGAAAGCCCCAGTAAAGAAACATGGAATTGGAAAAGGTTTGATGACAGTATGGAGGGCAACAAATCCTGATGCAGGAGACCTTCCTATTGACTTTGGAGTTATTGACCAAGAAAATGCTGGATTACCTCGAAGTTCAAACTCTATATTACAAAAGTCAATCTGCGATAACAAGAAGCCCCGGAAGACACTAGCCACGATGGGGaggtcaaaaaataaattgcagaataagagaaataagTTACAGGAAAAGAGGAAGCTTTTCATGGAGAGGAGAATGGTGGAATCTAACAAATTTGCAAATCTGAAGCAGTCACTAAAGGAAAAATGTGAACTTGCTTTAAATAAGGAGATATCTGAGGAAGAGTTTGAACAAATTGCAATGTTAATTGATGATGAAGAGCTGGAGCTGAGAGAGTTACAAGCTGGACCAGATCCACTTATATGTTCTGATCATCTTGCGGGCAGTGGAATACTTGGTTGCTCACTTTGTAAAGATGCGCTGGCCAAGTTCCCCCCAGATTCTGTTAAGATGAAGAAACCCATTTGCTTGCAACCTTGGGACTCTTCTCCAGAAATTGTTAGGAAACTATTTAAGgtcttccattttctttatacGTATGCTGTAGTTGTTGATATATGTCCCTTCACCCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCGGTGCTTCTTGGAAAGATTCATGTGGCACTTCTCACACTTCTCCTATCAGACGTTGAAGTGGAGCTTACCAATGGATTTTTTCCTCATTCAAATAAATCGTGCAATTTTCTTGCATTGCTTCACTCAGTTGAAAATGAGGGCTATTCTCTGGACTTTTGGAAGAGATCTCTAAATTCTCTTACCTGGATAGAAATACTCCGTCAAGTGTTGGTGGCTGCTGGTTTTGGTTCAAATATAGGTACCTTGCGAAGAGAAGCCCTTAGCAAGGAACTAAATCTCATGGTGAACTATGGCCTACGCCCCGGCACCTTGAAGGGTGAATTGTTTAAAATCTTGTCAGCAAAAGGAAACAATGGGTCAAAAGTATCTGAGCTGGCTAATTCAATTCAGATTCTAGAATTAAAACTTACCAGCACAAGAGAGCAACTGGAGTCTTTAATATGTTCCACGCTTTCAAGTGATATtactttatttgaaaaaatttcttcatctgcATATCGACTACGTATGACCTCTGTTATGAAGGACGTTGATGCTTTTCAGTCAGATACAGAGAATTCAGGGAGTGTTGATGATGAACTAAGTGACAGTGATGCATGTAGCATTGATGATGCTTTGGAATGTGATTCAGAAATCCCTAATTTAAGGAAATTCAGCCGTGCAAAAAATcgtaaaactaaatttaatatgcTGGCAGTGCACACTGAAATTGATGAGAGCCATCCTGGGGAAGTATGGCTGTTAGGACTGATGGAGGGTGAATATTCAGATCTAAGCATTGAAGAAAAGTTGAATGCATTGGTAGCTCTGACTGATCTTCTTTGTTCTGGATCCAGCATCAGAATGAAGGATCCAACAAAAGTTACACCTGAGTACAATTCCAGCATCCAGTATCATGGTTCTGGGGCAAAACTAAAGAGGTCGTCAGTAAGGAAGCCTGTTCCATTCTGGAACCAGATTGTGCAAATGCAATGTGTCAAAGAAGTGCACTCATCACTGGATTCTCATCCCTGCCCTGTGGATTCCTCATTATTAATGTCACATTCTTATAATCGTGAGGCATCCTCTGGGAAGGGAAAGGAAGTGGAAGTAACAAGTTCAATTGATTCACACACCATTCAATCAGTGTTCTTGGGATCTGATCGTAGGTACAACAGATACTGGCTTTTCTTGGGCCCTTGTAATGCTGATGACCCTGGCCATCGTAGGGTATATTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCATTGTTTGCTTTATTGTCAGTTTTGGATGACAGAGGCAAACGGGAGGCTCTTCTTATTGAATCTTTAGAGAAGCGCCAAGCATCACTTTGCAGAGCTATGTCCAGGGTAATGGTTAGTCATACTGGAATGGGGCATATGTCTCATTCTGATCAGTGTGAGCTGGATTTGGTTGTGGACGACAGTAATTCGCCAATATCTGATGTAGACAACGTGAGCCTATTTGAGACTGTGAAAGACTCTTTGCCATCAGCTGGAGCCGTAGTTCTAGAAGctggaaagaagagagaggaaCAAGTGAAAAAATGGATCCGTCTTCAAGCATATGATTCATGGATATGGAATTCCTTTTATTTAGATCTTAATGTTGTAAAATATGGTAGAAGACCTTATCTAGATTCTCTGGCTAGATGTGAGAGTTGTCATGATCTATACTGGAGAGATGAAAGACATTGTAAAATTTGCCATACAACATTTGAGCTTGATTTTGATTTAGAAGAAAGATACACAATCCACACGGCCACATGCAGGGAGAAAGAAGACATCAATGCATTTCCAAAACATAAAGTCTTATCATCACAGATCCAATCACTGAAAGCTGCAATTTATGCCATTGAGTCTGTTATGCCTGAAGATGCCTTAGTGGGTGCATGGAGAAAATCTGCTCACAAGTTATGGGTCAAACGGCTAAGACGGACCTCAACTTTGGGGGAGCTTTTGcagGTTCTTGCAGATTTTGTTGGTGCCATTAATGAGGACTGGTTGTTTCAACGTAATTTTCTAGAAGGTGTAGTTGAAGAAATCATTGCCTCTTTTGCATCAATGCCGCATACTTCATCTGCCCTAGGTCTATGGTTAGTCAAATTAGATGCCATAATTGCTCCCTATCTGGATAAAGTCCATCCCCAAAATAAGCAGGGATTCAATAAGAGGTA 3476 0.395 MKTMKIQRKTPSQLQALDNFYAEEKYPTERAIKDYAAALGLTYKQVRDWFVEKRRRGKRENGVILQLHSSLGKKLLPRSGQNFLGVAAAIGHVQDLSNQKADANSSSRYNRAMTRNVRKKNKRECLQELVPSDYILTKVFRKDGPPLGLEFDSLPSRSFLDDSGPKISLPACQEDRGPVKRRKASENAIETHHDANVKAPVKKHGIGKGLMTVWRATNPDAGDLPIDFGVIDQENAGLPRSSNSILQKSICDNKKPRKTLATMGRSKNKLQNKRNKLQEKRKLFMERRMVESNKFANLKQSLKEKCELALNKEISEEEFEQIAMLIDDEELELRELQAGPDPLICSDHLAGSGILGCSLCKDALAKFPPDSVKMKKPICLQPWDSSPEIVRKLFKVFHFLYTYAVVVDICPFTLDEFVQAFHDKDSVLLGKIHVALLTLLLSDVEVELTNGFFPHSNKSCNFLALLHSVENEGYSLDFWKRSLNSLTWIEILRQVLVAAGFGSNIGTLRREALSKELNLMVNYGLRPGTLKGELFKILSAKGNNGSKVSELANSIQILELKLTSTREQLESLICSTLSSDITLFEKISSSAYRLRMTSVMKDVDAFQSDTENSGSVDDELSDSDACSIDDALECDSEIPNLRKFSRAKNRKTKFNMLAVHTEIDESHPGEVWLLGLMEGEYSDLSIEEKLNALVALTDLLCSGSSIRMKDPTKVTPEYNSSIQYHGSGAKLKRSSVRKPVPFWNQIVQMQCVKEVHSSLDSHPCPVDSSLLMSHSYNREASSGKGKEVEVTSSIDSHTIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALFALLSVLDDRGKREALLIESLEKRQASLCRAMSRVMVSHTGMGHMSHSDQCELDLVVDDSNSPISDVDNVSLFETVKDSLPSAGAVVLEAGKKREEQVKKWIRLQAYDSWIWNSFYLDLNVVKYGRRPYLDSLARCESCHDLYWRDERHCKICHTTFELDFDLEERYTIHTATCREKEDINAFPKHKVLSSQIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLGELLQVLADFVGAINEDWLFQRNFLEGVVEEIIASFASMPHTSSALGLWLVKLDAIIAPYLDKVHPQNKQGFNKR 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00201 1158 ProSiteProfiles 'Homeobox' domain profile. 10 60 IPR001356 GO:0003677
Bva04g00201 1158 Coils Coil 548 568 - -
Bva04g00201 1158 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 6 1152 IPR044977 GO:0006357
Bva04g00201 1158 SMART HOX_1 2 64 IPR001356 GO:0003677
Bva04g00201 1158 Pfam DDT domain 390 443 IPR018501 -
Bva04g00201 1158 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 668 707 IPR028942 -
Bva04g00201 1158 Pfam Homeodomain 8 59 IPR001356 GO:0003677
Bva04g00201 1158 SMART testlast3 387 446 IPR018501 -
Bva04g00201 1158 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 800 873 IPR028941 -
Bva04g00201 1158 Gene3D - 1 66 - -
Bva04g00201 1158 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
Bva04g00201 1158 CDD homeodomain 7 61 IPR001356 GO:0003677
Bva04g00201 1158 Coils Coil 260 287 - -
Bva04g00201 1158 PANTHER OS07G0619600 PROTEIN 6 1152 - -
Bva04g00201 1158 ProSiteProfiles DDT domain profile. 387 446 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00201 Bva-Chr4 1206953 1219920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00201 5 159 Homeobox Transcription Factor Family AT1G28420 30.114 7.03e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva04g00201 WSD 6.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00201 - - aprc:113853612 1519.21