Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00172 ATGCATGGGTCGGAAGGTGAGGAGTGGAAACAGAGGCGGCACATGTGGCCAGTCCCTGCCAACGCGACAACTGTAGCTCCAGCTGCCGATTCTTCATCATCTGAATTAATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGCGCACTCTTCAAGCCACCCCAAGATTCCCCTCCTTTTATTGGAATAATTCGCaagttaactttgaagaaagAGGAAGGTCCAAGTTTAGGAGTGAATTGGTTGTATCGGCCTGCTGATCTGAAACTTGCAAAAGGGATCTTGCTGGAAGCAGCACCAAACGAGGTGTTCTACTCCTTTCACAAGGATGAAATACCTGCTGCATCTTTACTGCATCCGTGTAAAGTTGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCTGCATTTGTCTGTAGACGAGTGTATGATATTGACCGCAAGTGTTTATGGTGGCTAACTGATAAGAACTACATTAATGAACGACAGGAAGAAGTTGATCAGCTATTAGACAAGACAAGACTAGAAATGCATGGGGCAGTGCCGTCGGGAGGTCGTTCGCCAAAACCTTTGAATGGTCCAACATCGACACCATCATTGAAATCTGGTTCTGATAACATTCAAAATAGTTCTTCCTTTGGTTCACAGGGTaagggaaaaaagagagaacgGGGTGATCAGGGGTCTGATTCATCTAAAAGGGAACGGTTAACTAAAACAGAAGATGGGGGTTCTGGTCAATTTAGGCCAGAAAGCATGTTAAAGTCTGAGATTGCTAAAATTACAGAGAAAGGTGGTCTTGTAGACTTTGAAGGAGTTGAAAGACTGGTACAACTCATGCAACCTGACAGCAGTGACAAGAGAATAGATTTGGCTGGGCGAATAATGCTGGTTGATGTAATAGCAGTAACAGATCGGTTTGAGTGTCTTGGTTGGTTTGTACAGCTCCGGGGTTTGCCTGTATTGGATGAATGGCTCCAGGAGGTCCACAAGGGGAAACTAGGGGATGGTAGTTCACCTAAAGAAAGCGACAAGTCTGTTGAGGAATTCCTATTAGCTTTACTTCGTGCATTGGATAAACTTCCTGTGAATCTCCATGAACTACAGAACTGTAATGTTGGAAAATCTGTGAATAATTTACGTAGTCataaaaattctgaaattcaGAAGAAAGCTAGGAGTTTAGTGGATACGTGGAAGAAACGTGTTGAAGCTGAAATGAATATGAGTGATTCAAAAACTGGCTCTAGCCGTGGTGTTTCTTGGCCAACCAAGCCAGCACCTTCTGAGGTTTCTCATGTTGGCAATAGGAAAACTGGAGGATCTGTTGATATTGCTGTGAAGAGCTCCACTTCACAACCCTTGGCATCTAAAAATTCTCAAGCTAAGCATAGCACTGGAGAAGCATTATCCAAGTCCTCTCCATCCTCTGGTTCAACCAAAATAATGACCACCTCGGTGGGCAGTAATTCAAAGGATCTGAACTCTAAAATGTCAGTTGGAGCTGGAACGTCAGATCTACCCCTGACACCTATCAAGGAGGAAAGGAGCAGCAGTTCTAGTCAATCACAAAACAACAGCTTGTCTTGTTCTAGTGAACATGCAAAAGCTATTGGTTCTTCTTGTAAGGAAGATGCCAGGAGCTCGACTGCTGTGTCCCTGAGTGCAAGCAAAGTTCAGAGTGGTGTAACTCGTACTCGAAAATCCAGTAATGGTCTGCATGGTTCAGCTGTTAGTGTGGGTCAGAAGGAGCTGAGCTCTGGAAAGAACTCAAGCAGAAATTCACCTTCTGAAAGGGCGTCACCAACCCAAGTATCCCATGAAAAATTACCCGATGTACCCCAGTCTGATCATGGGAATAATCAGCGACTCATTGTCAGGTTGCCAAACACTGGTCGTAGTCCTGCCAGGGGATCTAGTGGGGGATCTGTTGAAGATGCTGCTGCTTTGAGTGGTAAAGGTTCACCTTCTGCAGATAAGCATGAGAGTCAGGACAGAAGAGTGAAATCGAAAACTGATGCTTCGCAGAATAATGTTGCATCTAACATGATCACTGATGTGTGTGATGGAAATGTTGCCCCAACTGGTTATGAGGAAGGTAATGGCTCACCAGTGGGCGATGAACGGTTTAGGGCCAGTCAAGATGGTGAAAAAGTGGCAGAAACATCAAAACCATCCAGTTCATTATCAGGACTTGTTTCCAGATCTGGCCAGACATATGATGCTTCTTTAAGTTCCATAAATGCACTTATTGAAAGCTGTGCGAAAATTTCTGAATCAAGTGTTTCTGTGTCCCCTGGAGATGATGTTGGGATGAACTTACTTGCAACTGTAGCTGCAGGGGAAATATCCAGATCTGAAAATGTTTCACCTGTGGCTTCTCCTGGGAGGAAGTCGCCTGTGGCAGATGAATCTTGCTCAGGTAATGATGGAAAGTCAAAACATTCTGTGGAAACTGCTGCTTGCACTCCTGGACAATCTGATGGTGGCACAACTGGAGAAAACATGAACCATGTAGATCTATTGCGGTTTAAGAATGATTTGAGGCATCCTCTTGCACCAGCATTGTGTGATCTGCCTGGAGATGGTGAAGCTACTTCATCTGGCTGTACAGAGAAAGCTGATGTCAGAACTCAAATGAACTCCTCCCCAACAGACATCTTACCAAACTCAGAAGGCCCATCCACAAGGACTGAAATTAAAGAGGATGCTTCTGAAACTATGTTGTCTGCTAAAAAGGAGTCTTCTGTGGAGCCTGGAGGAGTGCATCAATTTCATGAGCAGAGGGAATTGGGAAATCACTTGGTTAAAGGAAGCAATAGTTCAGATTCTAGATTAAAAACAAGGGATTCCTCTTTTGGTGAAGATCGGAAGGCTGAGCATGTGGATGAGGTGACCATTGAGAATAATTTAACCTTAGTATCAGAAGGGGCTAGTGCAAATATAAAGATTGATAAGGCAACCAATGAGAAATCACCTGAATCATCTTCAGTTTTGGGTAATCAGAACCAAATAAGTCTGGAGAAAGCTACAGGTATTGGCATTGCAGTGCAAAATACATCCCCAGTTGCAGAAAACTGTGAATCCATGGAGGGTGGCACAAAAGATGATATGGTGCTATCTTCTGCTTCAGGCAAAGCTTTGATGGATTCCAAGTCTGTAAATGCTGATGACATGAAACCAGGTTTGGTTGAGCAAAATGAAATGAGATTGGACTTGGATACATCAGTTTCAGCTAGTATTGATGTGTGTGCTGAGGAGAATGTGGATAGGAAAGAGGTACCTGGTCAATGTTCTGCTTCATCAGTTCAGAATGAGTCACCAAGAATTCCTGTGCAAGAGAGTGACGTCCATAAAAAATCTCCAGGGTGTAACTTGGACCGTGTTGAATCAGAGGATGCAGAAGAACGACATGCATCCAGTGCTAATGCTTCACTTACTGCTGCAGGGTCAGATATGGCAGTAAAGGTGGACTTTGATTTGAATGAGGGCTTTCCTGTTGATGATATGAATCAAGGGGAGAATGTAAGACAGGAAGAACCTATCACATCTTCTGCGGTTCACATGCCTTGCCCAGTGCCTTTTCCTATTTCTTCCATATCTGCAGGTTTCCATGCTTCAATTACTGTGGCTTCAGCCGCCAAAGGGCCATTTGTTCCACCAGAAAACCCATTGAGTAAAGGTGAACTTGGATGGAAAGGATCAGCTGCTACAAGTGCATTCCGACCTGCTGAGCCTAGGAAAAATTCAGAGCCACAGTCAAATCCAAGTGATGCACCTTCTGCAGGTACCACTGCTTCCAAGCAAGGTCGTGCTCCTTTAGATTTTGATCTGAATGTTCCGGATCAAAGAAGTTTTGAGGATGTGGCTTCCCAAGGTTCTTCACTGCAGAATAATTCAGAAGCTGGAACTCATGATCGTGGCAGTGCTGGACTTGATCTTGATTTGAACAGAGTTGATGAGACTCCTGATGCTGGGTCCTTCTATTTGAgcaaatatgatatttcttcATTACCAAGTAAGCCTTCATCAACTGGCGGGTTATCTAATGGTGGAAATGTTTCAagagattttgatttgaataatgGGCCAGGCCTTGATGAAGTTGGCACAGAGGCTCCTCCACGTAGTCATCAGATAAAGAGCAGCTCCTACTCTGCAATCACTGTCCCACCACTTTTACCTGGTCGAGCAGAACAGAGCTTTGTGGCTGGCGCTGGAGCACAGCGAATTTTGGGCACTCCAGGAAGCACGTCCTTTGGTCCTGAAATCTACAGGGGGCCTGTACTTTCATCTTCCCCAGCTGTTGCTTATCCATCCACTACGCCATTTCAGTATGCAGGATTTCCGTTTGAAACCAATTTCCCTTTGACTTCAAATTCCTTTTCTGGGTCTACGGCGTTTATGGATTCCTCCTCAGCTGGTGGACTTTGCTTTCCTACTATGCCCTCACAGTTGGTAGCACCTGGTGGTGTCGTGTCATCTGCTTTTCCTCGTCCCTATGTTATGAACCTTCCAGGTGGTACGAGTAATGTAATACCGGAAAGTAGAAAATGGGGAAGTCAAAGTTTAGATCTTAATTCAGGCCCTGGTGGTACAGATTTAGAACGCAGAGATGATAATAGATTGCCTTCAGGAATGAGGCAACTTTCTGTTCACAATTCTCAAGCACTAATGGAGGAACAAATGAAGATGTTTCATGTGCCAGGAGGTGTATTGAAGAGAAAGGAACCTGATGGTGGCCGGGACGGAGCTGATAGATTCAGTTACAAACAGCCGCGGCAGTA 4796 0.4387 MHGSEGEEWKQRRHMWPVPANATTVAPAADSSSSELICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLTLKKEEGPSLGVNWLYRPADLKLAKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIDRKCLWWLTDKNYINERQEEVDQLLDKTRLEMHGAVPSGGRSPKPLNGPTSTPSLKSGSDNIQNSSSFGSQGKGKKRERGDQGSDSSKRERLTKTEDGGSGQFRPESMLKSEIAKITEKGGLVDFEGVERLVQLMQPDSSDKRIDLAGRIMLVDVIAVTDRFECLGWFVQLRGLPVLDEWLQEVHKGKLGDGSSPKESDKSVEEFLLALLRALDKLPVNLHELQNCNVGKSVNNLRSHKNSEIQKKARSLVDTWKKRVEAEMNMSDSKTGSSRGVSWPTKPAPSEVSHVGNRKTGGSVDIAVKSSTSQPLASKNSQAKHSTGEALSKSSPSSGSTKIMTTSVGSNSKDLNSKMSVGAGTSDLPLTPIKEERSSSSSQSQNNSLSCSSEHAKAIGSSCKEDARSSTAVSLSASKVQSGVTRTRKSSNGLHGSAVSVGQKELSSGKNSSRNSPSERASPTQVSHEKLPDVPQSDHGNNQRLIVRLPNTGRSPARGSSGGSVEDAAALSGKGSPSADKHESQDRRVKSKTDASQNNVASNMITDVCDGNVAPTGYEEGNGSPVGDERFRASQDGEKVAETSKPSSSLSGLVSRSGQTYDASLSSINALIESCAKISESSVSVSPGDDVGMNLLATVAAGEISRSENVSPVASPGRKSPVADESCSGNDGKSKHSVETAACTPGQSDGGTTGENMNHVDLLRFKNDLRHPLAPALCDLPGDGEATSSGCTEKADVRTQMNSSPTDILPNSEGPSTRTEIKEDASETMLSAKKESSVEPGGVHQFHEQRELGNHLVKGSNSSDSRLKTRDSSFGEDRKAEHVDEVTIENNLTLVSEGASANIKIDKATNEKSPESSSVLGNQNQISLEKATGIGIAVQNTSPVAENCESMEGGTKDDMVLSSASGKALMDSKSVNADDMKPGLVEQNEMRLDLDTSVSASIDVCAEENVDRKEVPGQCSASSVQNESPRIPVQESDVHKKSPGCNLDRVESEDAEERHASSANASLTAAGSDMAVKVDFDLNEGFPVDDMNQGENVRQEEPITSSAVHMPCPVPFPISSISAGFHASITVASAAKGPFVPPENPLSKGELGWKGSAATSAFRPAEPRKNSEPQSNPSDAPSAGTTASKQGRAPLDFDLNVPDQRSFEDVASQGSSLQNNSEAGTHDRGSAGLDLDLNRVDETPDAGSFYLSKYDISSLPSKPSSTGGLSNGGNVSRDFDLNNGPGLDEVGTEAPPRSHQIKSSSYSAITVPPLLPGRAEQSFVAGAGAQRILGTPGSTSFGPEIYRGPVLSSSPAVAYPSTTPFQYAGFPFETNFPLTSNSFSGSTAFMDSSSAGGLCFPTMPSQLVAPGGVVSSAFPRPYVMNLPGGTSNVIPESRKWGSQSLDLNSGPGGTDLERRDDNRLPSGMRQLSVHNSQALMEEQMKMFHVPGGVLKRKEPDGGRDGADRFSYKQPRQ 1598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00172 1598 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1385 - -
Bva04g00172 1598 SMART TFS2_5 329 408 IPR003617 GO:0005634
Bva04g00172 1598 MobiDBLite consensus disorder prediction 446 506 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1519 1549 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 220 245 - -
Bva04g00172 1598 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1385 1596 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1098 1114 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 192 219 - -
Bva04g00172 1598 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1385 1596 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1251 1271 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 555 737 - -
Bva04g00172 1598 Pfam TFIIS helical bundle-like domain 357 406 IPR017923 -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1239 1321 - -
Bva04g00172 1598 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 311 420 IPR035441 -
Bva04g00172 1598 Pfam BAH domain 43 151 IPR001025 GO:0003682
Bva04g00172 1598 ProSiteProfiles BAH domain profile. 42 157 IPR001025 GO:0003682
Bva04g00172 1598 MobiDBLite consensus disorder prediction 815 837 - -
Bva04g00172 1598 ProSiteProfiles TFIIS N-terminal domain profile. 323 409 IPR017923 -
Bva04g00172 1598 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 274 410 IPR035441 -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 181 256 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 514 535 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 409 535 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 661 675 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1115 1142 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 880 904 - -
Bva04g00172 1598 SMART BAH_4 42 157 IPR001025 GO:0003682
Bva04g00172 1598 MobiDBLite consensus disorder prediction 722 737 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1337 1385 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1573 1598 - -
Bva04g00172 1598 Gene3D - 25 264 IPR043151 -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 936 960 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 788 837 - -
Bva04g00172 1598 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1385 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 555 641 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1288 1308 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1091 1148 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 1337 1360 - -
Bva04g00172 1598 CDD TFIIS_I 331 407 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 880 898 - -
Bva04g00172 1598 MobiDBLite consensus disorder prediction 412 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00172 Bva-Chr4 1071411 1079155 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva04g00172 BAH 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00172 - - gmx:112998769 2038.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00172 04 1071411 1079155 Bva04g00172 04 1071411 1079155 ECH
Bva03g02252 03 19623844 19630928 Bva04g00172 04 1071411 1079155 ECH