Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00164 ATGCTGCTTCCTATCAGCTGCATTCTCCTTATATGCCTCTTGAGCTCTTTGTCTTTCCCTATCATCGCTGCCTTCAACCTCAGCTTACCCCACCAGCATCCTTACCCTGAAGCCGTGGTTGATGAAGTTCAAAGCACAATAAATGCATCTCTATGCAGAAGACAACTACTATCCGCCACTGAGCATGGCCAAGCTTCTTGCCTCACCGGAAACCCCCTCGATGATTGCTGGCGGTGCGACTCCAACTGGGGCGCGAACCGGCAGAAGCTTGCTGAATGCGGCATTGGTTTCGGCCGCGACGCCATGGGCGGGAAGGGCGGCCAGATCTACATCGTCACCGACTCATCCGACTCCGACCCAGCAAACCCCCGTCCGGGTACTCTCCGGCACGCCGTGATCCAAGAAGAGCCTCTATGGATCGTGTTCTCCGCTGACATGACCATAACCCTCAAGCACGAGCTCATGTTCAACAGCTACAAAACCGTCGACGGCCGAGGCGCAAACGTTCACATCACCGGGCACGGCTGCATCACACTGCAATACGTGTCTAACATCATCATCCACAACATCCACATCCACCATTGCAAGCCGTCGGGGAACACTAACATACGGTCTAGCCCAACTCACGTAGGGTGGAGGGGGAAATCGGACGGCGATGGGATATCCATCTTCGGCTCAAGAAAGATCTGGATCGACCATTGTACGCTGTCTTACTGTACGGACGGTCTGATTGATGCGATAATGGGGTCCACAGGGATTACCATATCGAACAACCATTTCTCGCATCACGACGAGGTGATGCTGTTGGGTCACGACGATGGGTATTTGCCGGACTCAGGGATGCAGGTGACCATCGCGTTTAACCACTTCGGCGAGGGTCTGGTGCAGCGTATGCCTCGGTGCAGACGCGGGTACATCCACGTGGTCAACAATGATTTCACGCAGTGGGAGATGTACGCTATCGGCGGTAGTGGTAACCCCACCATAAACAGCCAGGGCAACCGCTACACGGCGCCTTCCGATCCCAGCGCCAAAGAGGTGACGAAGCGCGTGGACACAAACGAGGGGGGTTGGGCAGGTTGGAATTGGAGGACAGAGGGGGACGTAATGGTAAATGGAGCATTCTTTGTACCATCAGGAGCTGGACTGAGCACACAGTATGCTATGGCCTCCAGCGTGGCACCGAAGTCCGCCGTTCAAATCGACCAGCTCACCATGTACTCCGGCGTCTTTGGTGATCCCAGGGATAACGGTGACATATATCCCGGGTCCAACCGCGGTGGGTCCGTGACCGGCGCCAGCGGCAACACCGGCACCGGCACAGGCACAGGCACAGGGGGGTCCAGTGACGACGGGGAATTGTTTGGAATGATTTTCAGAGGTAGTAGCAGCGAAGCAGCTCCACTTCCCTCATCCATTATTTcaacctttttctcttttttaattatttccattttgtATACTATCACCAACCATGCTGTCCGGTTATCATTGCTATG 1499 0.541 MLLPISCILLICLLSSLSFPIIAAFNLSLPHQHPYPEAVVDEVQSTINASLCRRQLLSATEHGQASCLTGNPLDDCWRCDSNWGANRQKLAECGIGFGRDAMGGKGGQIYIVTDSSDSDPANPRPGTLRHAVIQEEPLWIVFSADMTITLKHELMFNSYKTVDGRGANVHITGHGCITLQYVSNIIIHNIHIHHCKPSGNTNIRSSPTHVGWRGKSDGDGISIFGSRKIWIDHCTLSYCTDGLIDAIMGSTGITISNNHFSHHDEVMLLGHDDGYLPDSGMQVTIAFNHFGEGLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPSDPSAKEVTKRVDTNEGGWAGWNWRTEGDVMVNGAFFVPSGAGLSTQYAMASSVAPKSAVQIDQLTMYSGVFGDPRDNGDIYPGSNRGGSVTGASGNTGTGTGTGTGGSSDDGELFGMIFRGSSSEAAPLPSSIISTFFSFLIISILYTITNHAVRLSLL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00164 499 Pfam Pectate lyase 152 334 IPR002022 -
Bva04g00164 499 Gene3D - 70 412 IPR012334 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bva04g00164 499 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bva04g00164 499 PANTHER PECTATE LYASE 7 428 - -
Bva04g00164 499 SUPERFAMILY Pectin lyase-like 64 403 IPR011050 -
Bva04g00164 499 MobiDBLite consensus disorder prediction 427 448 - -
Bva04g00164 499 MobiDBLite consensus disorder prediction 417 449 - -
Bva04g00164 499 SMART amb_all 145 342 IPR002022 -
Bva04g00164 499 MobiDBLite consensus disorder prediction 330 351 - -
Bva04g00164 499 PANTHER PECTATE LYASE 18-RELATED 7 428 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00164 Bva-Chr4 1028263 1032740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00164 1 449 Polysaccharide Lyase AT3G53190 67.181 0.0 592
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00164 K01728 - gmx:100808438 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00164 04 1028263 1032740 Bva13g02013 13 16102413 16105682 BWGD