Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00159 ATGGAAGCTGCAGAGGAGCTGGCTTCGGGTCCGAACGAGCAAACCCACATCGCCAAAGGGAAGAGAACAAAAAGGGTAAGGCCACAATCCCCTATCCCCGTCTTTAATTCTTCCAACCAAGATCATGGTGAAGCAGAAGATGATTTCCACAATGTTGATAAAGATGACAACTTTGATAAAACATCCCCTGCCACCACTTCCTCGACCCGAAACCGAGATAGCacagaagaagaggaggaCATGGCCAATTGTCTGATCCTTCTAGCTCAAGGCCAATCCCGGGAATCTCCGAAACCCGCCGAGGAAGATGATAATGTCATGAATTGTACCAAGTTCAGTAGTAGAAGATTCATGGAAGCTGCTTCTTTAGGATCTGGTAAAGCAGGGTTTTATGTTTATGAATGCAAGACTTGTAACAAAACATTTCCTTCCTTTCAAGCACTTGGTGGACACAGAACAAGTCACAAGAAGCCTAAGGCCATAGCTGCTTTGATGGCCATTGATAACGACAAGAAGCAACTCTTGTTCTCATCGGATGAAgatgaatttaaattcaagaaCAACAACAGAAGCAacccattttctcttcaaatgAATAGAGGGAATTTGTGTAGCAACAACAGCAAACCCAAGGTCCACGAGTGCTCTATCTGTGGTGCTGAGTTTACATCAGGACAAGCATTGGGGGGTCATATGAGGCGGCATCGGGCAACAATTGGAACCAATACGACGTTGTCTTTGTCCCCAATGGCTTTGGAACCAGAACAACAACAAcctagaaagaaaagaaacgtTTTGTCATTGGATTTAGATCTCAACCTTCCAGCACCAGAAGATGATCAAACAGAATCCAAGTTTGCCTTTGCATCCaagcaacaacaacagcagcagGAACAACAGCAACACCAAGCAAGTCTTGTCTTCTCCGCGCCGGCTTTGGTGGATTGTCATTACTG 956 0.4111 MEAAEELASGPNEQTHIAKGKRTKRVRPQSPIPVFNSSNQDHGEAEDDFHNVDKDDNFDKTSPATTSSTRNRDSTEEEEDMANCLILLAQGQSRESPKPAEEDDNVMNCTKFSSRRFMEAASLGSGKAGFYVYECKTCNKTFPSFQALGGHRTSHKKPKAIAALMAIDNDKKQLLFSSDEDEFKFKNNNRSNPFSLQMNRGNLCSNNSKPKVHECSICGAEFTSGQALGGHMRRHRATIGTNTTLSLSPMALEPEQQQPRKKRNVLSLDLDLNLPAPEDDQTESKFAFASKQQQQQQEQQQHQASLVFSAPALVDCHY 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00159 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 235 IPR013087 -
Bva04g00159 318 ProSitePatterns Zinc finger C2H2 type domain signature. 135 155 IPR013087 -
Bva04g00159 318 MobiDBLite consensus disorder prediction 41 60 - -
Bva04g00159 318 MobiDBLite consensus disorder prediction 1 79 - -
Bva04g00159 318 SUPERFAMILY beta-beta-alpha zinc fingers 132 235 IPR036236 -
Bva04g00159 318 PANTHER ZINC FINGER PROTEIN ZAT5 3 318 - -
Bva04g00159 318 Gene3D Classic Zinc Finger 131 235 - -
Bva04g00159 318 SMART c2h2final6 213 235 IPR013087 -
Bva04g00159 318 SMART c2h2final6 133 155 IPR013087 -
Bva04g00159 318 MobiDBLite consensus disorder prediction 241 303 - -
Bva04g00159 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 160 IPR013087 -
Bva04g00159 318 Pfam C2H2-type zinc finger 212 237 - -
Bva04g00159 318 Pfam C2H2-type zinc finger 132 158 - -
Bva04g00159 318 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 3 318 - -
Bva04g00159 318 ProSitePatterns Zinc finger C2H2 type domain signature. 215 235 IPR013087 -
Bva04g00159 318 MobiDBLite consensus disorder prediction 286 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00159 Bva-Chr4 990040 991216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00159 1 318 C2H2 Transcription Factor Family AT5G04390 44.947 1.64e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g00159 zf-C2H2_6 9.8e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00159 - - gmx:100799383 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00159 04 990040 991216 Bva13g02018 13 16131958 16132975 BWGD