Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00143 ATGACAGATTTTCAGCCACTACAACAGAAGCCTGAGTCCACTAATGCCCATGCTGAGTTTGAGCGTGGTCTGGAGGAGTTTATGCGTGggcagttggatgattgtatGTCATGTGCTTCGTGTAGCTCCACTCGCACTCCAGATGATGAGGATGATGAGGGTGATCAGCTAGTCCGGAGGAGGAGAAGGTCTGATCTTGAAGGGGATGAATTAGCAGAGTCATCAGCTGCTCGGAGGCGTCACTCGAGGATTTTAAGCAGATGGGCTGCCCGGCAAGCGCAAGAGATGATAACTACCATTGAGAGGAGGAATAGGGAGTCTGAGTTGATGGCACTTGCAGGGTTACACACAGTCTCAATGCTGGACTCCTCTTTTTTGAGGGGATCACAGTCTCCAACTTCAGGCCGGGAGGGGGCTGCAGAGAGGCCAAGCACTCGGGCATCTGCCATTCTGCAGATGTGGCGTGAATCGGAGGATGAGCATTTATTGAATCGGGCACGTGAAAGAGTGAGGGAAAGGTTGCGGCAACAAAGGAGTGCTGAGTCTAATACCAATGTCTCAAGTACAATGTCAGAGAGTCGAGGCAGTGAGCATCTGGGGAGTTTGGGGGATGCAACTGAAAGTGAAAATGATTATGGTACTTGGTCACATGATCAGACTGGGTCACAAAATGAACATGGGGACCATAATGGGTCTACCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAAAGGGAGAGAGTGAGACAGATTGTTCGGGGATGGATGGACAGTGGGATTAGTGATCATTCAGCTAATGTGAATCAGAGAAATAACAGCCGCAGAGCTGAATGGCTTGGTGAAACAGAGCGTGAAAGGGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGAGAGGTTCACGTGGAAGCTGGCGAAGTGCTCAAGCCAATGAACCTGGTCCTCAAGTTGATCGGGTCCGTGATGGACTGGTAGCTGATCAGGATGAGGGCCAGCCAGAGCATGTTCGGAGGGACATGTTAAGGTTGCGTGGAAGACAAGCTCTTGTTGATTTGCTTATGAGGATAGAAAGGGAAAGACAACGGGAGCTTCAGGGTCTGTTGGAGCATCGTGCTGTTTCTGATTTTGCTCATCGGAATCGTATTCAGTCTTTACTCAGAGGTAGATTTCTCCGAGGTGAAAGAACTGTTGAAGATGAGAGGCCACCTTCTATGGCAGCAAATGAATTAAGCCAGTTAAGGCAGCGACATACTGTCTCTGGTTTAAGAGAAGGGTTTCGCACAAGATTAGAAACAATTGTTCGTAGTCAAGCTGGGAGCAATTCTGATGCCACATCTGATAGTAACATCAGCGAAACTAGAAGTGACTGGAATCAAACCAACAACTCGATAGATGCCCAACAGGAAAATTATGGACAAGACCAGATTAGGAGCCTGGAAACTGAAGTGCGTCAGTTACCTGATCAAACAGGAGCACTGGAAAGTCGCACCAGTGAAAGTGTAACTTGGCAAGAAGCTGGTTCTCAAGGAGGAAATTGGCAGGAACAAATTACCGAAAATGTAGGAGGAAGCTGGCTGGGGAGACCTTATGGCCCATTCAATCAGTTGAGAGATGAAAGAGCAGTTAATGATTGGCCTCAGGAAACTCCCAGAAATGTAGAAGGGGAAGTTACTCATCCACGAGAAGCTCATGGTTGGCATGAGGATAACTCAAGGGAAACTGTCAGTCCTAATTGGGCAGAAGGACCCTCTGGTCCAGCAAGGAATCGTGGTGGTGTTCCTTTTAGAAGATTCAGCAGATTTCACCCTCCTGATGATGATAATGTGTACAGTATGGAGCTTAGAGAACTTTTAAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGAGAAAGTCTGGATCATTTAATTCAGTCATATGTGGACAGGCAAGGTCGTGCACCAATTGACTGGGAGTTGCACAGAAACGTGCCAACACCAGCTCCTGCCTCACCTGATCAAGGGCCTGTTCAGCAGAGAGATGAACACAATGAGGATCAACGTGATGCCATTAACAGACCTTCACTGGTTTTACCATCTCCACCAGTGCCTCCGCCACAACCACTCTGGCACCAGGATTTGCATCAGACTGGCTGGTCTCGCCATAGTATGCACCGTTCTGAAATTGAGTGGGAGATAATCAATGATTTAAGAGCGGATATGACAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAAGCTTGCATGGATATGCAACTGGAGTTGCAGCGTTCTGTCAGACAGGAAGTCTCTGCTGCTCTGAACCGCTCAGCTGGTGAAAAAGGGTTGTGTGCTGAGACATCAGAAGATGGGTCTAAGTGGGGGCATGTGAAAAAAGGAACTTGCTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGGCACATGTGCACTTGTTCCAAATGTGCCAATGAGTTAGTTCGCGGTGGGGGTAAGTGTCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCAATACTGTA 2564 0.4762 MTDFQPLQQKPESTNAHAEFERGLEEFMRGQLDDCMSCASCSSTRTPDDEDDEGDQLVRRRRRSDLEGDELAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGREGAAERPSTRASAILQMWRESEDEHLLNRARERVRERLRQQRSAESNTNVSSTMSESRGSEHLGSLGDATESENDYGTWSHDQTGSQNEHGDHNGSTREQSPDLGEVERERVRQIVRGWMDSGISDHSANVNQRNNSRRAEWLGETERERVRIVREWVQMTSQQRGSRGSWRSAQANEPGPQVDRVRDGLVADQDEGQPEHVRRDMLRLRGRQALVDLLMRIERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRGERTVEDERPPSMAANELSQLRQRHTVSGLREGFRTRLETIVRSQAGSNSDATSDSNISETRSDWNQTNNSIDAQQENYGQDQIRSLETEVRQLPDQTGALESRTSESVTWQEAGSQGGNWQEQITENVGGSWLGRPYGPFNQLRDERAVNDWPQETPRNVEGEVTHPREAHGWHEDNSRETVSPNWAEGPSGPARNRGGVPFRRFSRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVDRQGRAPIDWELHRNVPTPAPASPDQGPVQQRDEHNEDQRDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRADMTRLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGEKGLCAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00143 854 MobiDBLite consensus disorder prediction 52 78 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 40 78 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 548 594 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 435 472 - -
Bva04g00143 854 SUPERFAMILY RING/U-box 801 847 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 222 243 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 207 221 - -
Bva04g00143 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 789 852 IPR013083 -
Bva04g00143 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 854 - -
Bva04g00143 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 488 516 - -
Bva04g00143 854 Coils Coil 731 751 - -
Bva04g00143 854 CDD mRING-HC-C3HC5_NEU1 801 841 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 179 196 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 1 22 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 173 243 - -
Bva04g00143 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Bva04g00143 854 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 854 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 556 573 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 659 683 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 125 146 - -
Bva04g00143 854 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00143 Bva-Chr4 896611 902472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00143 802 848 C3H Transcription Factor Family AT3G06140 42.553 1.15e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00143 - - gmx:100784174 1359.36