Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00136 ATGAATTGTCTTCAGAATCTTTCTCGATCCTCTACTTTTCCCTTCCAAGGTTTCAGATGCTACCAAAGGAAGCCTCCTCCCTCTGCTAATTCACTGGTTATTATCAGTGCTTCCAATCAGACTAATCTAAATCGAAGTATGGCAATGAAGTCTGCTTCCGGTTCTATGTCCAGTGCAGAGACAAGCAGTGCTGATATGAAGGAGGAGAATTCTGAGACATACAGTCATAACATGACTGAAGCCATGGGTGCTGTCTTGACCTATAGGCATGAACTAGGAATGAACTACAACTTCATCCGTCCAGACTTAATTGTGGGATCATGCTTAcagACTCCTGAAGATGTTGACAAGCTACGCAGAATAGGAGTAAAAACAATCTTTTGCTTGCAACAAGACCCTGATCTAGAATATTTTGGAGTTGATATCAATGCCATACGAGAGTATGCAAAGGCTTGCACTGACATTCAACACCTGCGTGCTCAAATAAGGGACTTTGATGCATTTGATTTAAGGAGGCGGCTTCCAGCTGTAGTTAGCAAACTAGACAAGGCAATCAATCGCAATGGGGGTGTGACATATATACATTGCACTGCTGGACTTGGAAGAGCTCCAGCTGTTGCAttaGCATATATGTTTTGGGTTCAGGGTTATAAACTTAACGAAGCTCATACACTGCTTCAGAGCAAACGGTCATGTTTCCCAAAATTGGATGCCATAAAAAGTGCAACAGCTGATATTCTGACAGGCTTCAATAAAAAGCTTGTTACTTTGAAGTGGGAAGACAACAATTGCACTACAGTGGAAATTTCTGGACTTGATATTGGATGGGGCCAGAGAATGCCTCTAAGTTTTGATGACAAACAAGGTTCATGGCTTCTCGAGAGGGAATTGCCTGAAGGAAGCTATGAGTACAAGTACATTGTTGATGGAGAATGGACTTGCAATGAGGATGAAGATGTGACCTCTCCAAACAAAGACGGCCATGTCAATAATGTAGTTGAGGTCCTCGAAGATCCTGGCAGTGATCGTGCTTCCCTTAGGAAGAGATTGACCGGTGATGATCCTGATCTCACAAAAGATGAACGGCTGAGAATAAGAGAGTTTCTTGAAGATTGCCCTGATGACGAACAATA 1133 0.4245 MNCLQNLSRSSTFPFQGFRCYQRKPPPSANSLVIISASNQTNLNRSMAMKSASGSMSSAETSSADMKEENSETYSHNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRRIGVKTIFCLQQDPDLEYFGVDINAIREYAKACTDIQHLRAQIRDFDAFDLRRRLPAVVSKLDKAINRNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLNEAHTLLQSKRSCFPKLDAIKSATADILTGFNKKLVTLKWEDNNCTTVEISGLDIGWGQRMPLSFDDKQGSWLLERELPEGSYEYKYIVDGEWTCNEDEDVTSPNKDGHVNNVVEVLEDPGSDRASLRKRLTGDDPDLTKDERLRIREFLEDCPDDEQ 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00136 377 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 92 237 IPR029021 -
Bva04g00136 377 ProSiteProfiles Dual specificity protein phosphatase domain profile. 95 252 IPR020422 GO:0006470|GO:0008138
Bva04g00136 377 SUPERFAMILY E set domains 253 335 IPR014756 -
Bva04g00136 377 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 172 230 IPR000387 GO:0016311|GO:0016791
Bva04g00136 377 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 1 376 - -
Bva04g00136 377 Pfam Glycogen recognition site of AMP-activated protein kinase 255 337 IPR032640 -
Bva04g00136 377 PANTHER PHOSPHOGLUCAN PHOSPHATASE DSP4, CHLOROPLASTIC 1 376 IPR030079 GO:0005982|GO:0007623|GO:0019203
Bva04g00136 377 CDD DSP_laforin-like 94 241 IPR045204 GO:0019203|GO:0046838
Bva04g00136 377 SMART dsp_5 95 245 IPR020422 GO:0006470|GO:0008138
Bva04g00136 377 Pfam Dual specificity phosphatase, catalytic domain 138 233 IPR000340 GO:0008138|GO:0016311
Bva04g00136 377 CDD E_set_AMPKbeta_like_N 255 335 - -
Bva04g00136 377 Gene3D Immunoglobulins 250 340 IPR013783 -
Bva04g00136 377 Gene3D Protein tyrosine phosphatase superfamily 88 368 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00136 Bva-Chr4 862660 868263 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00136 94 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.965 1.33e-152 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00136 - - gmx:100804010 586.645