Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00108 ATGGACGAGATGAACAAGATTGATGATGTGATTTTGCCCGGTTTTCGGTTCCATCCCACAGATGAGGAGCTTGTTGATTTTTACCTCAGAAGAAAAATTCAGCAGCAACCTCTTTCCATTGAGCTGATTAAGCAAGtcgatatttataaatatgatcCATGGGATCTTCCAAAGCTGGCGAACTCTTCAGCTCCTCCCAAAAAGCTCTTAGACAAAACCCTCCCTGCCAATGATTCGTGGGCAATTTGTAGAATATTCAAGAAAGCCAACATGTCCATGGCACAGAAGGCTTTATGTCACTCTTGGATGAATCAGTTACCAGAAAGCATGGTCTCTGATATGCTCGGTCAAGGTACAAACAGCAATCAGTTCATCAGTTCAGAGAATATTTCTTGCAGAACAGAAATAGCATCAGCAGCCATTGATCAATTTTTTGGTAGCAATGAATTACACCAGCAAGTGTCAAGTGCTAATCTCACAGCTTGTTCGGAGAATGCTCATATTTTTCCCTCTTACAAACCCATCAATAATAGTACAGTGTCCAAGTCTTCTTCCCAATTTCCTGTTTTGAATGGAGACTTTGGAGACAGTAGCTTCATCTTCTCAACACTCGAATCGTCAACTGATGCTAGTTCTATGCTTTTCAACCCTGACCGCTTAAGCTTTGAAGGGCCAAACCCAGCTCCATCACAGTGGGGAATTACCGGGCAAACCATTGGATTTCCCTTCAGTTTACCTCCAAGTGACCGTACTAGTTGGAAGGCTACTCTGCCATGGGACTCACCCTCACCACCTTGTCCCAGTGATATGTCCACAAGCTATTCCACTAATAAATGCTACACTTA 845 0.4237 MDEMNKIDDVILPGFRFHPTDEELVDFYLRRKIQQQPLSIELIKQVDIYKYDPWDLPKLANSSAPPKKLLDKTLPANDSWAICRIFKKANMSMAQKALCHSWMNQLPESMVSDMLGQGTNSNQFISSENISCRTEIASAAIDQFFGSNELHQQVSSANLTACSENAHIFPSYKPINNSTVSKSSSQFPVLNGDFGDSSFIFSTLESSTDASSMLFNPDRLSFEGPNPAPSQWGITGQTIGFPFSLPPSDRTSWKATLPWDSPSPPCPSDMSTSYSTNKCYT 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00108 281 SUPERFAMILY NAC domain 10 60 IPR036093 GO:0003677|GO:0006355
Bva04g00108 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 3 61 - -
Bva04g00108 281 Gene3D NAC domain 20 69 IPR036093 GO:0003677|GO:0006355
Bva04g00108 281 ProSiteProfiles NAC domain profile. 11 167 IPR003441 GO:0003677|GO:0006355
Bva04g00108 281 MobiDBLite consensus disorder prediction 257 281 - -
Bva04g00108 281 Pfam No apical meristem (NAM) protein 13 60 IPR003441 GO:0003677|GO:0006355
Bva04g00108 281 MobiDBLite consensus disorder prediction 266 281 - -
Bva04g00108 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 231 279 - -
Bva04g00108 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 68 209 - -
Bva04g00108 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 61 - -
Bva04g00108 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 231 279 - -
Bva04g00108 281 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 68 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00108 Bva-Chr4 690138 691627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00108 2 60 NAC Transcription Factor Family AT1G26870 76.271 7.53e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva04g00108 NAM 4.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00108 - - qsu:112040201 181.03