Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00105 ATGGGAAGACCCCCTTGTTGTGATAAAGAAGGAGTCAAGAAAGGGCCTTGGACTCCAGAAGAAGATATCGTTTTGGTGTCTTACATACAAGAACATGGCCCTGGAAATTGGAGGGCTGTGCCCACAAATACAGGCTTGCTAAGATGCAGTAAGAGTTGCAGACTTAGATGGACTAATTACCTCCGGCCAGGAATCAAACGTGGGAATTTTACAGACCAAGAGGAGAAGATGATCATCCATCTTCAAGCTCTTCTTGGAAATagATGGGCTGCCATAGCTTCATACCTTCCACAGAGAACAGATAACGACATTAAGAACTATTGGAATACCCatttgaagaagaagctgaagaagCAGATGCAAACAGTTTCAGAAGCAAGTTTTGGAAATGGCTTTTCAGATTCACAAACAATGCACAGAGGGCAGTGGGAAAGAAGACTCCAAACTGACATTCACATGGCCAAGAGAGCTCTCAGTGAGGCTCTGTCACCAGAGAAGGAGAAGCCATATTCTTGCTTATCTGATTCAAACCCAGCTTCAAATGGCTCTACTTCTTCCTCAAAATCTACACAATCCTCAAGCTATGCTTCAAGCGCAGAGAACATAGCTCGCTTGTTAAAAGGGTGGATGAAAAATCCACCAAAGGCAGCTAGAAGTAACTCAGCAATGACCCATAATTCCTTCAACAACACCATGGCTACTGCAGTGACTGATTCTGCTTCTAGTGAAGGAACTGAGAAAGGAAACTGCATGGAGTTGTCTGAGACTTTTGAATCCTTGTTTGGTTTTGAATCTTTAGATTCTTcaaattctgaattttctcCATCTCTGTCTCCTGAGGCTACTTTTTTCCAAGATGAAAGCAAGCCAGATAGTGGTTCAGAAATGCCCTTCTCCATGCTTGAGGAATGGCTTCTAGATGAAGATGCCCATTTTTTCTA 941 0.4134 MGRPPCCDKEGVKKGPWTPEEDIVLVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKQMQTVSEASFGNGFSDSQTMHRGQWERRLQTDIHMAKRALSEALSPEKEKPYSCLSDSNPASNGSTSSSKSTQSSSYASSAENIARLLKGWMKNPPKAARSNSAMTHNSFNNTMATAVTDSASSEGTEKGNCMELSETFESLFGFESLDSSNSEFSPSLSPEATFFQDESKPDSGSEMPFSMLEEWLLDEDAHFF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00105 313 Gene3D - 68 130 - -
Bva04g00105 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva04g00105 313 CDD SANT 16 61 IPR001005 -
Bva04g00105 313 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva04g00105 313 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Bva04g00105 313 MobiDBLite consensus disorder prediction 173 195 - -
Bva04g00105 313 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Bva04g00105 313 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva04g00105 313 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 309 - -
Bva04g00105 313 CDD SANT 69 111 IPR001005 -
Bva04g00105 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva04g00105 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 309 - -
Bva04g00105 313 MobiDBLite consensus disorder prediction 271 289 - -
Bva04g00105 313 MobiDBLite consensus disorder prediction 160 195 - -
Bva04g00105 313 SMART sant 13 63 IPR001005 -
Bva04g00105 313 SMART sant 66 114 IPR001005 -
Bva04g00105 313 Gene3D - 13 66 - -
Bva04g00105 313 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva04g00105 313 MobiDBLite consensus disorder prediction 271 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00105 Bva-Chr4 676187 677798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00105 1 311 MYB Transcription Factor Family AT5G62470 52.941 1.06e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva04g00105 Myb_DNA-binding 3.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00105 K09422 - qsu:112022179 429.483