Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00103 ATGGACATAACCCCCACAACaatcaccaccaccacctccaCCACTGTTAATACTACTGCTACTACTCCTCCTGGTGCAAAATCCCCAGAACCTGACAGTGAGACTCCGACCCGGATCCAACCCGCTAAGGGCTTGTCTTTCTCCAACGGTGTGCTCAAGCGCCACCACCCACACCACCACAACatccaccaccaccatcacCTCGCGAACCAGCCCGTGGTGGTTACTTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCATGCTTTGGATGGCTGCGGCGAGTTCATGCCTTCCCCCAACGCATCACCCACCGACCCGACTTCGCTCAAATGCGCCGCATGTGGGTGTCACAGGAATTTCCACCGCCGTGAGCCGGATGAGCCAATTCCCGCCCCGATCACCCACGTTATCGAGTACCAACCTCACCATCGACATCACCCTCCACCCCCGCCAGCACATCGAAGCCCCAATTCCGCTTCCCCACCACCGATCTCCTCATCTTACTACCCATCCGCACCCCACATGCTTCTAGCTCTCTCTGCGGGCTTATCGGTCCCGCCGGAGAGCACCGCTGCACCCAGCAACCACGCTCATTTCTCGGCGAGCCCGAATACAAGAAAGCGATTCCGTACCAAATTCACCCAAGATCAGAAGGAGAAGATGCACCAGTTCGCGGAAAGGGTAGGGTGGAAGATGCAGAAAAGGGACGAGGATTTGATACACGAGTTCTGCAATGAGATTGGGGTTGACAGAGGAGTTCTCAAGGTGTGGATGCACAACAACAAGAACACTTTGGGGAAAAAAGATGCCAATGGTGTTACCATCACTAGTGCTGGTTCAGCCATGCTCGAACAAGACCCCAGCAACACACTCGACCATGAACCTGCCATCAATGGGGATAACAAGGACAACGGCGGCGCCACCACGCCGGAACCAAATCACTACCACCACAGCGATAGTCAAGCAAACCTTGGTACTAATGggtcatcttcttcatcttg 1013 0.5183 MDITPTTITTTTSTTVNTTATTPPGAKSPEPDSETPTRIQPAKGLSFSNGVLKRHHPHHHNIHHHHHLANQPVVVTYKECLKNHAASLGGHALDGCGEFMPSPNASPTDPTSLKCAACGCHRNFHRREPDEPIPAPITHVIEYQPHHRHHPPPPPAHRSPNSASPPPISSSYYPSAPHMLLALSAGLSVPPESTAAPSNHAHFSASPNTRKRFRTKFTQDQKEKMHQFAERVGWKMQKRDEDLIHEFCNEIGVDRGVLKVWMHNNKNTLGKKDANGVTITSAGSAMLEQDPSNTLDHEPAINGDNKDNGGATTPEPNHYHHSDSQANLGTNGSSSSS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00103 337 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 77 128 IPR006456 -
Bva04g00103 337 MobiDBLite consensus disorder prediction 1 43 - -
Bva04g00103 337 SUPERFAMILY Homeodomain-like 198 271 IPR009057 -
Bva04g00103 337 MobiDBLite consensus disorder prediction 285 337 - -
Bva04g00103 337 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 2 294 - -
Bva04g00103 337 MobiDBLite consensus disorder prediction 306 337 - -
Bva04g00103 337 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 210 267 IPR006455 -
Bva04g00103 337 Pfam ZF-HD protein dimerisation region 75 129 IPR006456 -
Bva04g00103 337 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 76 128 IPR006456 -
Bva04g00103 337 Gene3D - 195 271 - -
Bva04g00103 337 MobiDBLite consensus disorder prediction 285 299 - -
Bva04g00103 337 MobiDBLite consensus disorder prediction 145 171 - -
Bva04g00103 337 MobiDBLite consensus disorder prediction 191 211 - -
Bva04g00103 337 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00103 Bva-Chr4 651770 653234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00103 27 269 ZF-HD Transcription Factor Family AT3G28920 62.745 5.05e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva04g00103 ZF-HD_dimer 1.4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00103 - - jre:108985975 378.252