Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00078 ATGAGGACCGTGAATCTTCtcgtatttttcttttgtctgtTGGCTGGATGTTATATGACGGCAGCCAAAGTGGTGCTGATTGGGAGCAATGTCACTCTTTCCTTCGACGATGTCGAAGCTAATTTCGCTACAACAATCAAAGGTTCTGGAGAATGTGGGGTATTATACTCGGCTGAGCCACTTGACGCCTGTACAGCACTGACAAATAAAGCTGAACAACACTCAAATACCAGTAACCCTTTTGTTATGATTATTCGAGGAGGATGTGGCTTTGATGAAAAGGTGAGAAGAGCGCAGAATGCTGGCTTCAAAGCCGCAATTGTCTATGACAATGAAGACGATGGTGTCTTAGTAGCAAtGGCAGGAAACTCAACTGGTATACATATACATGCTGTCTTTGTTTCTAAAGCTTCGGGTGAAGTCCTGAAGAAATACACTGGATTGACTAACTTGGAACTGTGGCTAAttccaaattttgaaaattcagcATGGTCTATCATGGCCATTTCATTCATTTCCCTACTAGCCATGTCTGCAGTTCTAGCCACCTGTTTCTTTGTTAGAAGGCATCGCATCAGAAGAGAAAGGCCACAGGCTTCTCATGTCCGTGAATTCCATGGAATGAGTAAGCGCCTAGTGAAAGCAATGCCAAGTTTGATATTCAGTGCTGTTGTTTCAGAGGATAACGGTACATCAAGAACTTGCGCAATATGCCTTGAAGACTATAGTGTTGGAGAGAAGCTCAGGATTCTTCCCTGCTGTCACAAGTTTCATGCTATGTGTGTCGATTCTTGGCTTACTTCATGGAGAACCTTCTGTCCTGTTTGCAAGCGTGATGCAAGAAATGGTTTAAACGATCCTCCACCTTCAGAATCAACACCTTTGCTCTCATCGGCATCTTCTTTATTGTCATCATCTGCAAGGTCATCGTTTGTGTCATCTTCAGCTATACAAATTGTCCCAGCAACATCACGGTCCCAATCTGTTTCTCGTAACCACTCTCTTTCTAGCACCCCTTATGTTCAGCCGTCTCTGAGGCCATCCTACCGCCAATCTCCCTCTCTAAGTGTCAGCCGAAGCTCAGTAGATCTCAGGAATGCATCCCAAAGATCTCAAGCTTCACATATGATTTCTCCCCATTCTATGGGCTACCCAACTTTATCATCTCTGAACTCGAGGTACATGTCTCCTTATATTCCGGGTTCAAGCAATGCTTCAGCAAGTTTTCTTGGTTCTTCTAGTCATCGTCAGCACCCACTTCGTTGTAGCGAATCCGCCACCAGTTTTTCTCCATTTGCTTCTGCTCATTCTCTTCCAGAATGCTA 1325 0.4317 MRTVNLLVFFFCLLAGCYMTAAKVVLIGSNVTLSFDDVEANFATTIKGSGECGVLYSAEPLDACTALTNKAEQHSNTSNPFVMIIRGGCGFDEKVRRAQNAGFKAAIVYDNEDDGVLVAMAGNSTGIHIHAVFVSKASGEVLKKYTGLTNLELWLIPNFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASHVREFHGMSKRLVKAMPSLIFSAVVSEDNGTSRTCAICLEDYSVGEKLRILPCCHKFHAMCVDSWLTSWRTFCPVCKRDARNGLNDPPPSESTPLLSSASSLLSSSARSSFVSSSAIQIVPATSRSQSVSRNHSLSSTPYVQPSLRPSYRQSPSLSVSRSSVDLRNASQRSQASHMISPHSMGYPTLSSLNSRYMSPYIPGSSNASASFLGSSSHRQHPLRCSESATSFSPFASAHSLPEC 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00078 441 MobiDBLite consensus disorder prediction 328 380 - -
Bva04g00078 441 SUPERFAMILY RING/U-box 216 289 - -
Bva04g00078 441 ProSiteProfiles Zinc finger RING-type profile. 235 277 IPR001841 -
Bva04g00078 441 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Bva04g00078 441 Gene3D - 24 153 - -
Bva04g00078 441 SUPERFAMILY PA domain 76 146 IPR046450 -
Bva04g00078 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 282 IPR013083 -
Bva04g00078 441 Pfam Ring finger domain 234 277 IPR001841 -
Bva04g00078 441 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 1 377 - -
Bva04g00078 441 CDD mRING-H2-C3H2C2D_ZSWM2 234 277 - -
Bva04g00078 441 SMART ring_2 235 276 IPR001841 -
Bva04g00078 441 Pfam PA domain 62 141 IPR003137 -
Bva04g00078 441 CDD PA_C_RZF_like 8 163 IPR044744 -
Bva04g00078 441 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 1 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00078 Bva-Chr4 475444 480376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00078 21 440 C3H Transcription Factor Family AT1G22670 47.653 1.48e-118 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00078 K15692 - gmx:100791248 632.098