Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00073 ATGTACGACAGCTCAGGCTGCACTGTTTACATAGGCAATCTAGATGAGAAAGTGACCGACCGAGTcttgtatgatattttaattcaagcaGGACGAGTGGTTGACCTCTACATTCCTAGAGATAAGGAATCTGACAAACCCAAAGGCTTTGCTTTTGCAGAATATGAAACTGAGGAGATTGCAGAATATGCTGTCAAGCTTTTTTCTGGTCTTGTGACGCTGAACAAAAGAACCCTGAAGTTTGCGATATCTGGGCAAGACAAACCTACCTCAAATCTCTTTACGGCAATCACTCCCTCATCAAATTCATCTCAGAGACCATGGCCGCCAATAAATAGTAATGCAGAAATTTCTACACTCTCTGCTGGGCTATCAACATCTGGCCGATTTTCTGAATATAATTCTCCCCCTCTTGTATTTCACCAATCTAGTGAGCATGGATCACACTACAAGGgcaacaattataattacagTCGAAGGGTTTTGAGGGCAACATTGGATAGCATTAGGCATTCTAGATCACGCTGCTATGATGCAAGTAAACCAATCCCATACCCATCTTACTA 566 0.3993 MYDSSGCTVYIGNLDEKVTDRVLYDILIQAGRVVDLYIPRDKESDKPKGFAFAEYETEEIAEYAVKLFSGLVTLNKRTLKFAISGQDKPTSNLFTAITPSSNSSQRPWPPINSNAEISTLSAGLSTSGRFSEYNSPPLVFHQSSEHGSHYKGNNYNYSRRVLRATLDSIRHSRSRCYDASKPIPYPSY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00073 188 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Bva04g00073 188 Gene3D - 2 94 IPR012677 -
Bva04g00073 188 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Bva04g00073 188 PANTHER OS01G0876500 PROTEIN 3 188 - -
Bva04g00073 188 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 86 IPR000504 GO:0003723
Bva04g00073 188 PANTHER RNA BINDING MOTIF RBM PROTEIN -RELATED 3 188 - -
Bva04g00073 188 SMART rrm1_1 8 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00073 Bva-Chr4 453819 455230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00073 8 87 Eukaryotic Initiation Factors Gene Family AT1G49760 31.250 2.74e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00073 K12831 - gmx:100803118 238.424