LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g00052	ATGGGTTATCCTCAATTGTGtgctcttttccttttgttcatTTCTGTGGGAATTTGTTTAGCTTCCTATATTGAAGATCAGAAGAGAGATAGGATAACTCAGTTGCCAGGACAACCAACGAACGTGAGGTTCGCCCAGTACTCTGGCTATGTAACTGTGAATGAGCAAGCTGGGAGGGCACTGTTTTACTGGTTAGTTGAGTCCCCAGCGAGTCGTGGACCTCGTTCAAGGCCTCTGGTGTTGTGGCTTAATGGTGGTCCTGGATGCTCCTCTATAGCTTATGGGGCAGCTGAAGAGATTGGCCCTTTTCGCATTAGGCCGGATGGGAAATCACTTTATTTGAATCCTTATGCTTGGAACAATTTGGCAAACATACTATTTCTTGAGTCTCCGGCTGGTGTTGGCTTTTCATACTCGAATAAAACATCAGATCTATACACAGCGGGTGACCAGAGCACAGCTGAAGATGCATATACATTTCTTGTTAATTGGTTTGAAAGATTTCCTCAGTATAAGCATAGGGAATTCTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTTCCTCAGTTGGCTAAGGTTGTTTacgagaaaaataaaggaatcaAGAATCCGGCCATAAATTTTAAGGGATTCATGGTTGGAAATGCTGTTACTGATGATCACCATGATTTTGTTGGCACATTTGAGTACTGGTGGACTCATGGTTTGATTTCGGATTCCACATATAAAATGCTAAGAGATGCTTGTGACTCTGAATCCTCCCAGCATCCATCGCTGACATGCATGGAGGCTTTAAAACGCTCTGTTGCGGAGCAGGGGAATATTGATCCGTATAGCATATTTACTCGGCCTTGCAATGATACAGCATCACTGCGACGCAGCTTGAGGGGTCGCTATCCATGGATGTCTCGAGCATATGATCCCTGCACTGAGAGGTATTCTGATTTGTATTTCAATCATCCCGAAGTTCAAAAGGCACTCCATGCCAATGTTACTGGGATTTCTTATCCATGGGAAACTTGCAGTGATATTGTTGGGAACTATTGGACGGATTCTCCACAGTCTATGCTTCCTATATATCAAGAGCTCATTAATGCTAGTATCAGAATATGGGTATACAGTGGTGACACAGATGCTGTGGTTCCAGTTACTGCAACTCGATATTCCATTGATGCCTTGAAGCTAACGACCATTGTCAACTGGTATCCTTGGTACGATAATGGCAAGGTTGGAGGGTGGAGCCAAGTTTATAAAGGGCTCACACTGGTTACAGTAACAGGAGCAGGACATGAAGTTCCCCTTCATAGGCCTCGCCAAGCATTCATTCTTTTCAGGTCATTCTTAGAGAACAAGCCAATGCCAAGTTA	1370	0.4277	MGYPQLCALFLLFISVGICLASYIEDQKRDRITQLPGQPTNVRFAQYSGYVTVNEQAGRALFYWLVESPASRGPRSRPLVLWLNGGPGCSSIAYGAAEEIGPFRIRPDGKSLYLNPYAWNNLANILFLESPAGVGFSYSNKTSDLYTAGDQSTAEDAYTFLVNWFERFPQYKHREFYIAGESYAGHYVPQLAKVVYEKNKGIKNPAINFKGFMVGNAVTDDHHDFVGTFEYWWTHGLISDSTYKMLRDACDSESSQHPSLTCMEALKRSVAEQGNIDPYSIFTRPCNDTASLRRSLRGRYPWMSRAYDPCTERYSDLYFNHPEVQKALHANVTGISYPWETCSDIVGNYWTDSPQSMLPIYQELINASIRIWVYSGDTDAVVPVTATRYSIDALKLTTIVNWYPWYDNGKVGGWSQVYKGLTLVTVTGAGHEVPLHRPRQAFILFRSFLENKPMPS	456

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g00052	456	Pfam	Serine carboxypeptidase	36	451	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	Gene3D	alpha/beta hydrolase	26	288	IPR029058	-
	Bva04g00052	456	PRINTS	Carboxypeptidase C serine protease (S10) family signature	421	434	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	PRINTS	Carboxypeptidase C serine protease (S10) family signature	164	189	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	PRINTS	Carboxypeptidase C serine protease (S10) family signature	115	127	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	PRINTS	Carboxypeptidase C serine protease (S10) family signature	128	138	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	Gene3D	-	357	450	-	-
	Bva04g00052	456	Gene3D	-	310	346	-	-
	Bva04g00052	456	SUPERFAMILY	alpha/beta-Hydrolases	27	454	IPR029058	-
	Bva04g00052	456	ProSitePatterns	Serine carboxypeptidases, histidine active site.	421	438	IPR033124	GO:0004185
	Bva04g00052	456	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	5	455	IPR001563	GO:0004185\|GO:0006508
	Bva04g00052	456	ProSitePatterns	Serine carboxypeptidases, serine active site.	178	185	IPR018202	GO:0004185
	Bva04g00052	456	PANTHER	CARBOXYPEPTIDASE	5	455	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g00052	Bva-Chr4	337898	342546	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva04g00052	320	454	Calmodulin-binding Proteins	AT2G22960	28.676	5.80e-12	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g00052	K16297		-	gmx:100812000	832.017