Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00038 ATGGCTAATAAGGACGTTGAGGTTGCTGAGCGTGGGTCCTTCTCCGCCAAGGACTACCACGACCCACCTCCAGCACCGCTCATTGACGCCGAGGAGCTCACTAAATGGTCCTTTTACAGGGCCTTGATTGCTGAGTTCATTGCCACTTTGCTTTTCCTTTACATTACTGTGCTCACTGTGATTGGTTATAAGAACCAGACTGATCCCAACATACACACTCTTCCATCTGATGCTTGTGGTGGGGTTGGTGTTCTTGGGATAGCATGGGCTTTTGGTGGCATGATCTTCATACTCGTTTACTGCACTGCTGGAATTTCCGGAGGCCACATTAACCCAGCGGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCTCTGATCCGAGCCATCATGTACATGGTGGCTCAGTGCTTGGGTGCTATCTGTGGAGTTGGGTTGGTCAAGGCCTTCCAAAAATCTTACTACACAAGGTATGGTGGTGGTGCCAACGAGCTTGCTGATGGCTACAGCACCCGCACTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTATACACAGTGTTCTCTGCTACTGATCCTAAGAGGAGCGCTAGAGATTCCCACGTCCCGGTTTTGGCTCCACTTCCAATTGGGTTTGCTGTGTTCATGGTTCACTTGGCTACCATCCCAGTCACCGGCACCGGCATTAACCCAGCTAGGAGTCTTGGGGCTGCTGTTATCTACAACCAAGACAAAGCCTGGGATGACCATTGGATCTTTTGGGTTGGGCCATTCATCGGAGCAGCCATTGCAGCTTTCTACCACCAATTCATCTTGAGGGCAGGTGCAGTTAAGGCTCTTGGATCATTCAGGAGCAACCCCACTGTTTG 875 0.5074 MANKDVEVAERGSFSAKDYHDPPPAPLIDAEELTKWSFYRALIAEFIATLLFLYITVLTVIGYKNQTDPNIHTLPSDACGGVGVLGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQKSYYTRYGGGANELADGYSTRTGLGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAVKALGSFRSNPTV 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00038 291 ProSitePatterns MIP family signature. 109 117 IPR022357 -
Bva04g00038 291 Gene3D Glycerol uptake facilitator protein. 25 291 IPR023271 -
Bva04g00038 291 PANTHER PLASMA MEMBRANE INTRINSIC PROTEIN 2,4-RELATED 4 288 - -
Bva04g00038 291 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 288 IPR034294 -
Bva04g00038 291 PRINTS Major intrinsic protein family signature 213 235 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 PRINTS Major intrinsic protein family signature 253 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 PRINTS Major intrinsic protein family signature 91 115 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 PRINTS Major intrinsic protein family signature 128 147 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 CDD MIP 40 273 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 TIGRFAM MIP: MIP family channel proteins 44 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 Pfam Major intrinsic protein 32 270 IPR000425 GO:0015267|GO:0016020|GO:0055085
Bva04g00038 291 SUPERFAMILY Aquaporin-like 32 275 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00038 Bva-Chr4 242833 245929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00038 3 291 Major Intrinsic Protein MIP AT3G54820 83.045 5.25e-178 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00038 K09872 - gmx:100815583 536.954