Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00031 ATGGAGTTGGGGACACATGTGGGACCCGCCGCTTATCCACAGGATTTGACTTTTCAAGTAACTTACACAGTCGTTCGGTTCAATTTGAAGAAGGAAAAATTCTCAAAGAAAATGATCGGGCCCAACTTCATGGACGAGATAGACTGCGGCAGCTTCTTCGACCACATCGACGACCTCCTTGATTTCCCCGCCGAAGACATTGACGCCTCCTTGCCCACCACCGGAAACTGCAACGCTTTCCCGAGCATTTGGCCGGCAGATTCTGAGTCTTTGCCTGGCTCCGATTCGGTTTTCTCGGGGAACAGCACATCGGACCTCTCGACGGAGCTCTCCGTTCCGTATGAAGACATTGTCCAACTGGAATGGCTGTCAAACTTTGTGGAGGATTCCTTCTGTGGAGGAAGCTTGACAATGAAGAAAGATGAGGTAGCATCGGCATCGGCATCGGCATCGGCAAACAAGCAATTCCAGACATCAAGCCCAGTTTCTGTGCTGGAAAGCAGCAGCTCTTGCTCTGGGGACAAGACTGCGCCTCGCAGCCCTGACATTGTTGTCCCTGTGCCGTGCGGGCGCGCACGCAGCAAGCGCCCACGCCCTGCCACCTTCAATCCTCGTCCTGTAATGCAACTCATCTCGCCTGCTTCCTCTGTTGGCGAAAACACACAGCCAAATGTGATTTCCAAGCCATGGTCTTCAGATTCTGACAATGCTGCAGACTCTCATCCTCTAATGAAGATCCCAAAGCAAGTCTCTGCGGagcataagaagaaaaagaaaatcaaagtcaCATTCACGTCGTCGTCGTCGTCGTCCTCTCCAACCGATGCTAATCACAGCTCACCAACACAAGCAGTTAGGAAATGTATGCATTGTGAGATAACCAAGACACCACAATGGAGAGCAGGACCAATGGGGCCTAAAACCCTATGCAATGCTTGTGGTGTTCGTTACAAGTCCGGCCGGCTCTTCCCCGAATACCGCCCTGCTGCAAGCCCAACTTTTTGCCCATCCCTGCACTCAAATTCCCACAAGAAGGTGATTGAGATGAGAACCAAGGCTCCCCAGAATCCTGCTCTGCCAAACAGTTCAGTTGACGATGCAGAACTCATTCCAAACACTAATAGCAGCCTTGCCCTTGAATACATTTG 1148 0.5044 MELGTHVGPAAYPQDLTFQVTYTVVRFNLKKEKFSKKMIGPNFMDEIDCGSFFDHIDDLLDFPAEDIDASLPTTGNCNAFPSIWPADSESLPGSDSVFSGNSTSDLSTELSVPYEDIVQLEWLSNFVEDSFCGGSLTMKKDEVASASASASANKQFQTSSPVSVLESSSSCSGDKTAPRSPDIVVPVPCGRARSKRPRPATFNPRPVMQLISPASSVGENTQPNVISKPWSSDSDNAADSHPLMKIPKQVSAEHKKKKKIKVTFTSSSSSSSPTDANHSSPTQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVIEMRTKAPQNPALPNSSVDDAELIPNTNSSLALEYI 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00031 382 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 286 345 - -
Bva04g00031 382 PANTHER GATA TRANSCRIPTION FACTOR 38 382 - -
Bva04g00031 382 MobiDBLite consensus disorder prediction 249 282 - -
Bva04g00031 382 ProSiteProfiles GATA-type zinc finger domain profile. 282 318 IPR000679 GO:0006355|GO:0043565
Bva04g00031 382 CDD ZnF_GATA 287 334 IPR000679 GO:0006355|GO:0043565
Bva04g00031 382 SMART GATA_3 282 332 IPR000679 GO:0006355|GO:0043565
Bva04g00031 382 Pfam GATA zinc finger 288 321 IPR000679 GO:0006355|GO:0043565
Bva04g00031 382 Gene3D - 283 332 IPR013088 GO:0006355|GO:0008270
Bva04g00031 382 MobiDBLite consensus disorder prediction 149 176 - -
Bva04g00031 382 PANTHER GATA TRANSCRIPTION FACTOR 8 38 382 - -
Bva04g00031 382 MobiDBLite consensus disorder prediction 263 282 - -
Bva04g00031 382 MobiDBLite consensus disorder prediction 149 206 - -
Bva04g00031 382 PIRSF Txn_fac_GATA_plant 29 376 IPR016679 GO:0003677|GO:0005634|GO:0045893
Bva04g00031 382 ProSitePatterns GATA-type zinc finger domain. 288 313 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00031 Bva-Chr4 200457 203907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00031 38 372 C2C2-Gata Transcription Factor Family AT3G54810 41.499 2.66e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Bva04g00031 GATA 6.7e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00031 - - gmx:100816641 459.529