Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00022 ATGGGTAATGTTGAAATTCCTGATTGGCTCAAACGGCTGCCATTGGCTCCTGAATTTCGACCTACTGACACTGAATTCGCCGACCCAATTGCTTATATCTCAAAGATTGAGAAGGAAGCTAGCGCCTTTGGTATTTGTAAGATTATCCCACCATTACCTAAACCTTCAAAGAGATAtgtcttttataatttgaataagTCGCTTATGAAGTGCCCGGAATTGGGTTCAGATATCAATTCCTCTGGTGTATGTaattctttgaaaataaattctggGGATAGTGGTAGTGATGGGAAGGTGCGAGCTGTGTTTACTACAAGGCAGCAGGAACTGGGGCAAAGtatgaagaaaaccaaagaaGGAGTTCAAAGTCCATCGTCGGGTGTTCATAAGCAAGTATGGCAAAGTGGGGAGATTTATACACTTGATCAATTTGAGTCTAAATCAAAGGCTTATGCAAGAAGCGTACTAGGCATGGTTAAAGAGATTTCTCCTCTGGTTATAGAGGCTATGTTTTGGAAGGCAGCTTCAGCGAAGCCAATATATGTGGAGTATGCCAATGATGTGCCTGGGTCTGCCTTTGGAGAATTAAAAGGTCAATCTCATTATATTCATACACGGCGAAGAAGAAAGGGTTATTATAAGAGAAGTCTAGCTAGTTCTAATTGCAAGAAAACTGAAATGGATAGCACTAGAGATGCTAACGCTGATGAGAATAAGGATACTTGTACCCAAAATCAAGCCGATACATGTTTACTGACATCTGAGTCAACTGCAACTCTGTCAACATTATCATCAAATGAAGGTTCAAATTCTTCTTGGCAAGAGAATTCAGATGCCGGCAATGAGATGGAAGGTACTTCTGGTTGGAAGCTTTCAAACAGTCCTTGGAACTTACAAGTTATTGCACGGTCACCTGGCTCACTAACACGATTCATGCCAGATGATATTCCGGGTGTTACTTCCTCCATGATATACATTGGAATGTTATTTAGTTGGTTTGCTTGGCATGTAGAGGATCATGAGCTTCATAGcttgaattttcttcacaCTGGTGCACCCAAGACTTGGTATGCTGTTCCTGGAGATTATGCCTTTACTTTTGAAGAAGTCATCGGCTCTGAAGCTTATGGTGGTAATATTGATCACTTAGCTACACTAACACTCTTGGGCGAGAAGACAACTCTTTTGTCACCCGAGGTAGTTGTTATGTCCGGTATTCCTTGTTGCAGGTTAATACAGAATCCTGGCGAATTTGTTGTGACTTTTCCAAGGGCTTATCATGTAGGATTCAGCCATGGTTTTAACTGTGGGGAAGCTGCTAACTTTGGAACTCCACAGTGGCTTACAGTAGCCAAAGAAGCTGCAGTCCGTAGAGCTGCTATGAATTATCTTCCTATGCTCTCCCATCAGCAACTGCTTTACTTGTTGACCATGTCTTTTATTGCAAGAGTGCCAAGGTCATTATTACCAGGTGTAAGGAGTTCTCGTCTGAAAGACCgtcagaaagaagaaagagaattaTTAGTAAAAAGGGCTTTTATAGAAGATGTGCTGCATGAAAATAATCTGCTTTCCGTTCTTTTTGAAAAGGGAACAACTCATCATGCTGTTTTGTGGAATGCTGATTTACTGCCAGATCCTAGCAAACATTCTCAGATGCCTGATCTCGCTTCCACTTCTGGAACTTCTGTGGTGGAGATGTCAAATATTAGCTCTGCTGATAAGAGTAGTCATGGTTATCTGTTTGATAAGATGAGTTTGTCCATGGAGAATCTGACAGATCTATCTCTGGGTGATGATGATCTTCCATGTCACTTCCAAACCGATTCAGGGGCATTGGCTTGTGTAGGTTGTGGAATCCTTGGTTTTCCTTTTATGGCTGTGATTCAACCATCTGAGAGATCATTAATGGAACTTCTGCCTGTTAATCATCATGTACTTAAAGATTCCTCTCCAAACCCCAATGTCTCCTTGCAAGGCTCTGTCTCAGGAAATCTCCTTTGTGTTTCTGATCTTCCTTTAGAAAAGGAACTATCAAAACCATCATTGAAGTTTGACAGGGCTTGGAACCTTTCTAGTAAATTTTTGAGGCCTAGGATTTTCTGCCTGGAGCATGCTCTTCAGATTGTGGAGATGTTGCAGGGTAAAGGTGGTGTCAAGCTGCTTGTTATTTGCCATTCAGACTATCAGAAAATAAAGGCACATGCCAGTGCAGTTGCAGAGGAGATAGGTAGTGCTTTTGATTATAATGAAGTTCCCTTAGATATTGCATCCCCAGAAGATTTGACCTTGATAGATTTGGCAATTGATGGTGAAGAACTTGATGCAAGTAACGAAGACTGGACATCTAAACTAGGTATCAACCTACGCTATTGTGTCAAAGCAAGAAAGAACTTACCATCTAAACAGGTTCCTTATGCACTGGCATTGGGAATGCTGTTCTCTGATAAAGGTCATAGTTCAGAATCCTTTTCTATAAAATGGAAGTCACGGAGATGTCGCTCCAAAAGGTTAAAACATTTATGCCGGGCTAAAGCATGTGATGGCACTCAGACAAAGAAGGATGAACAGTCGGAGAGAAGAATAGAACTAGTAAGTGGCTCCATtgctaaaaatgaaattttatttcaatattccAGGAGGAAGTTCAAGTCAAAACAAGGTTGTTCCTCTGGAAGAAGCATGTCCCATGAATCCCAAGAGAAGTCCAAAAATGTGTCAATTGTCCTGTCTGTAGATCATAATAATCAGTTATCTGAAAAAGACCTTGATACTGAGAATTCTAGGAGTGATTGTGTATTATCATGCGTTTCTACTTCTACTGGAACTAAAATGCAGCATGAAAACCAAACTTCTGATGTGGCCACTAGTATGAGCTTGAACATGGCCACTTCACAACTTCCGAATTCCATTCCCAATCCTATGTTAATGTATGGAGGTGCTGGCACAGAGACTGAGAACCAAACTATGAAGGAACGGGAAATAGATggaaaaactaatttaacaGCATCCAGTCTTTCCAACATGCATTACAAGATCAGTGCCTCAGAAATATGTAATAGTGAGGAGAATCAGATTTCTTATGAGAGGAAAAATTCTTACTCAATTACAGTTGTTACAAGTGAAAGGAGTGAAACACTTAGAAAGAATCAGACTACAGAAGTAAGTATGTGTGATTGCATGGATTTGGATGATAATAAGCAAGAAGAACTTCAATCTAGCCACAAAACCAACAAAGAGGAAGCTGCTTCATCTACTGTTTCATTGGTCAATCAACCTGCACTTGCCTCTGAGGAAGGGTGTTCTGGAAGTCCCAAAAAGAATTATGTTGCTGAAACCAATAGTAAAGCTATGTTCATAAGGGAGACAACCGAACTAGAAATTATTACTTCAAACAGAAGTAATGAGGAACTTATTCCCCATTATGATAAACCCATAAATAAGCATACTCCGAATGGAGAGAACTTTGAAGTTCCAGTAGATCTTTCTGCTGTAGACTTGTATGATCCTGTACCGTTGGATGCTGAAGTCCAGGAAGATGTGCAGATTGGAAAAGGTGACAACAGGGAAATAAATCTGTCTTCTCATCTCCCAGTAAAAGAAAGGTGTGAATATCCTAGAGGGGAACAAGCCGAAGGGTTGAGTGAAGTGATTTTAGACTCTGAAAAGCAGCATCAGGACCAGAACAGGAATAAAAGTAGTGAGGAACCTGCTCCTAGTTATGTTCTCAAAGGGGAAACTGAAAGTATAACTGTATCAGAAGTGATATGTTCCCAGGTTTCACAGGAAGCCTGCCCGAAAGGAGAATCAAATactcaatttatttcatatagaAGAAGGGATCGAGAAATACAGCCAAAAAGTATAAATGATGAAGTGTGCTCCGGAACTGAAACTTCACAGATGGAGTCTTCTGTCTCAATCCAAGAATGTTCTACAATTGAGAAAGAGGCATGTTatatagagaaaaatggaACTGAATTTCATTTATCACAAGATAATAGGGAGTGGGAAGGCTCTGAGTTGACCATGCCTGCCTCCAGGTCAGATGctgggaagaagagaaagagggaaGTGGACCGGATAACAAAGGATAATTTCAGCTGCTATGGCTTTTCTAGAAGTCCGTGTGAAGGGTTGAGGCCAAGGGCTGGGAAGGTAGTCACAGGTAAAAGCATGGTTGACACCAGCGATACTGTCAAGGAAACTCTGGAGACTAAAACGGCAAGGAAACGTCCTGATATTTTGGTTTGTCAGAAGAATAAAAACATTGATGTCAAGAAGTCTCATAAGTGTGATATTGATGGTTGCGGAATGAGTTTCACGACGAAAGCAGAGTTACAGTTGCACAAACGCAACCGTTGCCCACATGAGGGGTGTAGAAAGAAGTTTAGCTCGCACAAATATGCTTTGATTCACCAGCGTGTTCATGAAGATGAGAGGCCCTTCAAGTGCCCTTGGAAAGGTTGCTCCATGTCCTTCAAGTGGGCATGGGCTAGGACAGAGCATATACGGGTTCATACTGGGGAGAAGCCATATCAGTGCAAGGTTGAGGGATGTGGCCTTTCTTTCAGGTTTGTGTCAGATTATAGCAGGCACAGACGGAAAATGGGGCACTATGTGTG 4628 0.3993 MFIRETTELEIITSNRSNEELIPHYDKPINKHTPNGENFEVPVDLSAVDLYDPVPLDAEVQEDVQIGKGDNREINLSSHLPVKERCEYPRGEQAEGLSEVILDSEKQHQDQNRNKSSEEPAPSYVLKGETESITVSEVICSQVSQEACPKGESNTQFISYRRRDREIQPKSINDEVCSGTETSQMESSVSIQECSTIEKEACYIEKNGTEFHLSQDNREWEGSELTMPASRSDAGKKRKREVDRITKDNFSCYGFSRSPCEGLRPRAGKVVTGKSMVDTSDTVKETLETKTARKRPDILVCQKNKNIDVKKSHKCDIDGCGMSFTTKAELQLHKRNRCPHEGCRKKFSSHKYALIHQRVHEDERPFKCPWKGCSMSFKWAWARTEHIRVHTGEKPYQCKVEGCGLSFRFVSDYSRHRRKMGHYV 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00022 424 SMART c2h2final6 336 360 IPR013087 -
Bva04g00022 424 SMART c2h2final6 313 335 IPR013087 -
Bva04g00022 424 SMART c2h2final6 366 390 IPR013087 -
Bva04g00022 424 SMART c2h2final6 396 422 IPR013087 -
Bva04g00022 424 PANTHER LYSINE-SPECIFIC DEMETHYLASE ELF6-RELATED 111 417 - -
Bva04g00022 424 Gene3D Classic Zinc Finger 375 396 - -
Bva04g00022 424 ProSitePatterns Zinc finger C2H2 type domain signature. 368 390 IPR013087 -
Bva04g00022 424 ProSitePatterns Zinc finger C2H2 type domain signature. 398 422 IPR013087 -
Bva04g00022 424 ProSitePatterns Zinc finger C2H2 type domain signature. 338 360 IPR013087 -
Bva04g00022 424 SUPERFAMILY beta-beta-alpha zinc fingers 384 418 IPR036236 -
Bva04g00022 424 MobiDBLite consensus disorder prediction 219 240 - -
Bva04g00022 424 Gene3D Classic Zinc Finger 302 336 - -
Bva04g00022 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 366 395 IPR013087 -
Bva04g00022 424 Gene3D Classic Zinc Finger 397 422 - -
Bva04g00022 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 313 335 IPR013087 -
Bva04g00022 424 PANTHER LYSINE-SPECIFIC DEMETHYLASE 111 417 - -
Bva04g00022 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 396 424 IPR013087 -
Bva04g00022 424 ProSiteProfiles Zinc finger C2H2 type domain profile. 336 365 IPR013087 -
Bva04g00022 424 Pfam Zinc finger, C2H2 type 313 335 IPR013087 -
Bva04g00022 424 SUPERFAMILY beta-beta-alpha zinc fingers 354 394 IPR036236 -
Bva04g00022 424 Gene3D Classic Zinc Finger 337 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00022 Bva-Chr4 133463 142477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00022 228 424 C2H2 Transcription Factor Family AT5G04240 55.224 1.64e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva04g00022 zf-C2H2 0.004 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00022 - - gmx:100819845 454.907