Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00010 ATGGGGATTTGTTTCAGCATTGAACAAGACCAAAAACTCCACTCTAATGCGAATTATACAGGAGATGAATTTGTTGCATCAACAACTAAGCATGGTAAAAGCCCAAGCAAAAGTCTGTTAGCCCCCATGAACATAACAGATCTTCGCCAAAGTCCTGGCTATTGTAATGTTGATATATTTACATATGAGGAGATGAGACTGGCCACAAAGCACTTTCGTCCAGACTTAATTCTGGGAGAAGGGGGTTTTGGAGTTGTATATAAAGGAGTTATAGATGCAAATGTGAGGCCAGGTCACAAGAGCACTCAAGTCGCCATTAAGGAGCTCAATCGAGAAGGATTTCAAGGTGATAGGGAATGGCTGGCGGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTTGTGAAGCTCATTGGATATTGCTGTGAGGATGAACATCGATTATTGGTTTATGAATACATGGAAAGTGGAAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAAAGCTGACTTGGTcaaaaagaatgaagattGCTTTACATGCTGCAAAAGGGCTTGCTTTTCTTCATGGTGCAGAAAGACCAATAATATACCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTTAATGCTAAGCTTTCAGACTTCGGTCTTGCAAAGGATGGGCCTATGGGAGACCAAACGCATGTATCAACACGAGTAATGGGTACATATGGATATGCTGCTCCTGAATATGTGATGACTGGGCATTTGACAGCTCGAAGTGATGTGTATGGCTTTGGGGTGGTGCTACTTGAGATGCTTATTGGAAGGAGGGCATTGGACAAGAGTAGACCGAGCCGAGAACACAACTTGGTTGAGTGGGCCCGCCCACTATTGAACCATAATAAGAAACTCCTGAGAATTTTGGATCCTAGAATAGAAGGCCAATATTCAACTAGAACTGCTATAAAGGTGGCTCATTTGGCATACCAATGCCTTAGTCAAAACCCAAAAGGCAGGCCACTCATGAGCCAGGTTGTTGAAATCCTTGAAAATTATCAGGCGAAGGGAGAAAATGAGGAAGGGCAAATGCTTCAAAGTGATAGTAGTAGTGTAACTATTTGTGAGGTTCCAAAGGGCACCACAGCAACAGGTACTCCAACAAAGGGGAAAAATCAATCTATAAGCGACGAGGTTTATAGGAGGAATGCAGCAAGAGAGAAAAGCAGAAGTGAACCTTCAAATGATTACAATTTATGTAGTCCTTCACCGGATTCTGTGGCAGCAGAGAAATCAGCTTCTTCCAGAAGTTG 1310 0.4214 MGICFSIEQDQKLHSNANYTGDEFVASTTKHGKSPSKSLLAPMNITDLRQSPGYCNVDIFTYEEMRLATKHFRPDLILGEGGFGVVYKGVIDANVRPGHKSTQVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMESGSLEKHLFRRVGSKLTWSKRMKIALHAAKGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLRILDPRIEGQYSTRTAIKVAHLAYQCLSQNPKGRPLMSQVVEILENYQAKGENEEGQMLQSDSSSVTICEVPKGTTATGTPTKGKNQSISDEVYRRNAAREKSRSEPSNDYNLCSPSPDSVAAEKSASSRS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00010 436 PANTHER OS01G0588500 PROTEIN-RELATED 29 397 - -
Bva04g00010 436 ProSiteProfiles Protein kinase domain profile. 72 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva04g00010 436 Gene3D Transferase(Phosphotransferase) domain 1 155 375 - -
Bva04g00010 436 CDD STKc_IRAK 78 351 - -
Bva04g00010 436 Gene3D Phosphorylase Kinase; domain 1 48 154 - -
Bva04g00010 436 Pfam Protein tyrosine and serine/threonine kinase 77 349 IPR001245 GO:0004672|GO:0006468
Bva04g00010 436 MobiDBLite consensus disorder prediction 413 436 - -
Bva04g00010 436 SUPERFAMILY Protein kinase-like (PK-like) 52 350 IPR011009 -
Bva04g00010 436 MobiDBLite consensus disorder prediction 377 398 - -
Bva04g00010 436 ProSitePatterns Protein kinases ATP-binding region signature. 78 107 IPR017441 GO:0005524
Bva04g00010 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
Bva04g00010 436 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL17-RELATED 29 397 - -
Bva04g00010 436 MobiDBLite consensus disorder prediction 377 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00010 Bva-Chr4 57975 62870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g00010 60 349 Glycoside Hydrolase AT3G07070 50.853 5.77e-100 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Bva04g00010 PK_Tyr_Ser-Thr 1.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00010 - - gmx:100800465 634.024