Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02514 ATGTCCTTCCGCAGTATAGTTCGAGATTTAAGGGATGGATTTGGAAGCTTGTCAAGGCGGAGTTTTGAGGTAAGGCTTCCTGGTCATCACAGGGGGAAGTCACATAGTTCAGTCCATGAGTTGCACGATCAGCCTCCATTGATACAGAACAGCCGCTGGGCTAGCCTTCCACCTGAGCTTCTTAGGGATGTTATGAAGAGATTGGAAGCAAGTGAGAGTATATGGCCTGCTCGTAAGCATGTGGTTGCATGTGCTGCTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTCTGTGGAAAGATTACTTTTCCTGTTTCCTTAAAGCAGcCTGGACCTAGGGATGGAACTATGCAGTGTTTCATCAAGAGAGACAAATCTAAACTCACATACCACCTTTTCCTCTGCCTTAGTCCTGTCCTGCTTGTCGAAAATGgaaagtttcttctttctgcaaAACGGACCAGAAGAACAACTTGCACAGAGTATATCATATCAATGGATGCAGATAACATATCGAGATCTAGCAACACTTATATTGGAAAACTGAGgTCAAATTTTCTTGGCACCAAATTCATAATCTATGATACGCAGCCTCCCTATAATAATGCTCAGCTGTCTCCACCAGGCCGAAGCCGGAGGTTCCATTCAAAAAAGGTTTCTCCAAAGGTCCCTAGCGGCAGTTATAATATTGCCCAAGTCACTTATGAGCTGAACGTGCTGGGTACAAGGGGGCCACGCAGGATGCACTGCACCATGTACTCGATCCCTTCATCGTCTCTTGAACCCGGTGGCTTTGTCCCAGGCCAGCCAGAGCTTCTCCCCCGCCCCCTGGAGGACTCATTCCGGAGCATCTCCctttcaaaatcaattgaCAATTCATCGGAGTTTAGCAGCTCTAGGTTCTCTGACATAGTTGGGCCTGGCAATGAAGACGAGGAGGGAAAGGAGAGACCACTAGTTCTCAAGAACAAGGCACCAAGATGGCACGAGCAGTTGCAATGTTGGTGCCTCAACTTCAGGGGCCGGGTGACGGTTGCCTCTGTCAAGAATTTTCAACTCATCGCTGCAACACAGCCTGCAGCTGGTGCTCCGACACCGGCACAGCCAACAcagtcttcttcttcttctgatcACGACAAGATTATTCTTCAGTTCGGCAAGGTTGGGAAGGATATGTTTACAATGGACTACCGATATCCCCTCTCGGCATTTCAGGCATTTGCGATCTGCTTGACCAGCTTTGACACAAAACTGGCTTGTGAATA 1286 0.4603 MSFRSIVRDLRDGFGSLSRRSFEVRLPGHHRGKSHSSVHELHDQPPLIQNSRWASLPPELLRDVMKRLEASESIWPARKHVVACAAVCKSWREMCKEIVSSPEFCGKITFPVSLKQPGPRDGTMQCFIKRDKSKLTYHLFLCLSPVLLVENGKFLLSAKRTRRTTCTEYIISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPYNNAQLSPPGRSRRFHSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRRMHCTMYSIPSSSLEPGGFVPGQPELLPRPLEDSFRSISLSKSIDNSSEFSSSRFSDIVGPGNEDEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPAQPTQSSSSSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02514 428 Gene3D - 48 101 - -
Bva03g02514 428 SUPERFAMILY Tubby C-terminal domain-like 102 428 IPR025659 -
Bva03g02514 428 ProSitePatterns Tub family signature 2. 413 428 IPR018066 -
Bva03g02514 428 SUPERFAMILY F-box domain 43 96 IPR036047 GO:0005515
Bva03g02514 428 PANTHER TUBBY-RELATED 1 428 - -
Bva03g02514 428 Pfam F-box domain 53 100 IPR001810 GO:0005515
Bva03g02514 428 MobiDBLite consensus disorder prediction 211 230 - -
Bva03g02514 428 MobiDBLite consensus disorder prediction 299 323 - -
Bva03g02514 428 Gene3D Tubby Protein; Chain A 112 422 IPR025659 -
Bva03g02514 428 Pfam Tub family 114 423 IPR000007 -
Bva03g02514 428 PANTHER TUBBY-LIKE F-BOX PROTEIN 10-RELATED 1 428 - -
Bva03g02514 428 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Bva03g02514 428 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 406 428 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 385 404 IPR000007 -
Bva03g02514 428 PRINTS Tubby superfamily signature 346 362 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02514 Bva-Chr3 21183487 21187687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02514 1 428 TUB Transcription Factor Family AT1G76900 70.769 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva03g02514 Tub 6.3e-118 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02514 K19600 - rcu:8283226 743.806