Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02496 ATGGGGAGGAGAGATAGTTACAAGCTATATGTCACCGTTCCCACACTCTTCCGGTGTCCCATCTCCATGGATGTTATGAGGTCTCCGGTCAGCCTCTGTACCGGTGTCACGTACGATCGCTCCAGCATCCAGAACTGGCTTGATTCTGGTCACGACACCTGTCCTGCCACCATGCAAGTCCTCCCCTACAAGGATTTCACCCCCAACCTTACTCTTCACCGCCTCATCGACCTTTGGCTACGCTCCGGCGACTGCTCGTTGGCCTCTCCCTCGTCCTCCTCGGTGCCACCTTCCCCTTGCTCCGTTTCAACAGATGATGTTCGGGATCTAATACACAGAATCAGAAACGACAATGAAGAAGACGTCGCCGTTTCGCTTCCAAAGGTTCTTGAGTTCGCCAGTTATTCAGAAGAGAACCGGCGGTTCTTGGCGAATTTTGCCGGTTTCTATTCGGTAGTGGTAGGGATTATCGGCAGGAATGGCTCTGAATTGGCGTTCTGGAAACCGCGATTAAAATTCTGGATTTG 527 0.5218 MGRRDSYKLYVTVPTLFRCPISMDVMRSPVSLCTGVTYDRSSIQNWLDSGHDTCPATMQVLPYKDFTPNLTLHRLIDLWLRSGDCSLASPSSSSVPPSPCSVSTDDVRDLIHRIRNDNEEDVAVSLPKVLEFASYSEENRRFLANFAGFYSVVVGIIGRNGSELAFWKPRLKFWI 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02496 175 Pfam U-box domain 13 82 IPR003613 GO:0004842|GO:0016567
Bva03g02496 175 CDD RING-Ubox_PUB 17 59 IPR045210 -
Bva03g02496 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 89 IPR013083 -
Bva03g02496 175 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 164 - -
Bva03g02496 175 PANTHER WDSAM1 PROTEIN 7 164 IPR045185 GO:0061630
Bva03g02496 175 SMART Ubox_2 16 79 IPR003613 GO:0004842|GO:0016567
Bva03g02496 175 ProSiteProfiles U-box domain profile. 12 86 IPR003613 GO:0004842|GO:0016567
Bva03g02496 175 SUPERFAMILY RING/U-box 8 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02496 Bva-Chr3 21055010 21056486 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02496 9 159 U-box Gene Family AT5G64660 49.342 1.76e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02496 - - gmx:100786235 181.03