Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02472 ATGGAAGTTGTATCTGTTTCGCGCACGTTTAGCAATTCTAActctttctccattttcagACCTCAAAACACCCAAATTCAGGGCCCTTCTGTAAACATTCGATTACCCAAGTCAACCAACAAAACGAGCAATTtccatctttcttcttcctgtaCTTCTTATTCTTTACTTCGCTGTTATTATTTCTCTACGAGGATAGCTGCAACTTCACCAGCTACTTCTACTTCCTAcacctcttcttcttcttccaccAGGGACAACCGCCATTGGATGGTGATAATGGAGAGGCCTGTGCAAGGGGTCAATTCCAAGGCAGAAGTCATTGATTATTATGTGAAGACTCTCCAAAGAGTTTTGGGAAGTGAGAAAGACGCTCAAATGTGCATATATGATGCTTCTTGGGAGACCCAATTCGGTTTTTGTTGTGACATAGATGAAGAAGCTTCCTCCCGGCTTGCCCGTTTACCTGGGGTGTTGTCGGTTAGGCCTGATCCAGATTTCAACTCCTTAGAGAAGCATTGTGGTTCATCAAATGGACAGGCAGATAATCTGTCAAATCTACAAATGGGACCAACTTTTCTGTTTCCTGCAGGGAATTCCAAACACTGGCTTGTTAGAATGGATAAACCTGGGATTGGGGTTGTTACGAAGGCCCAAATTGTTGATTATTATGCTCAAATACTGACCAAGGTCTTGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTTTCCTGGAAAGCAAACTTAGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACGAGAACTTGCTGGCGTGCCAGGGGTCCTATCAGTTCAGCCAGATAATAATTTGGAGTCTCAAAACAAGGATTATGGAGGTAGTAACTTGGAAGACAGTTTGAATGTGCTGAACTCTTCTGAAACAAGTCAGGCGGCCcctataaaaacaaaaaaactttttGTGACAGgCCTTTCATTTTATACATCTGAGAAAACCTTACGTGCAGCATTTGAAGGCTTTGGTGACATTGTTGAAGTTAAAGTTATTATggataaaatttctaaaaggTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAAGTGCAGCACTGAAGGAGATGAATGGCAAGATTATCAATGGCTGGATGATAGTTGTTGATGTTGCCAAGAGTAACCCACCAAAATACGGTAGAGGACATGCAAGACCAGCGGCCTG 1217 0.3936 MEVVSVSRTFSNSNSFSIFRPQNTQIQGPSVNIRLPKSTNKTSNFHLSSSCTSYSLLRCYYFSTRIAATSPATSTSYTSSSSSTRDNRHWMVIMERPVQGVNSKAEVIDYYVKTLQRVLGSEKDAQMCIYDASWETQFGFCCDIDEEASSRLARLPGVLSVRPDPDFNSLEKHCGSSNGQADNLSNLQMGPTFLFPAGNSKHWLVRMDKPGIGVVTKAQIVDYYAQILTKVLGNEKDAQMCIYHVSWKANLGFCCELDEDCARELAGVPGVLSVQPDNNLESQNKDYGGSNLEDSLNVLNSSETSQAAPIKTKKLFVTGLSFYTSEKTLRAAFEGFGDIVEVKVIMDKISKRSKGYAFVEYTTEEAASAALKEMNGKIINGWMIVVDVAKSNPPKYGRGHARPAA 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02472 405 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 36 403 IPR039206 GO:0016554
Bva03g02472 405 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 391 IPR000504 GO:0003723
Bva03g02472 405 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 196 282 IPR037045 -
Bva03g02472 405 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 72 168 IPR037045 -
Bva03g02472 405 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 381 IPR000504 GO:0003723
Bva03g02472 405 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC 36 403 - -
Bva03g02472 405 SUPERFAMILY RNA-binding domain, RBD 302 400 IPR035979 GO:0003676
Bva03g02472 405 Gene3D - 287 404 IPR012677 -
Bva03g02472 405 SMART rrm1_1 314 387 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02472 Bva-Chr3 20893220 20897820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02472 310 398 C2H2 Transcription Factor Family AT2G19380 37.079 4.29e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02472 - - gmx:100791652 554.288