Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02430 aTGGGTTCAGAGACTTTTCTGGAGATTTTATTAGCTGTTTTGCTACCGCCTGTGGGAGTTTTCCTTCGTTATGGCTTCGGAATTGAGTTCTGGATAGATCTGTTGCTGACCATATTGGATTGCTTCGCTCTCTGCTTCCTGTGGCAACAAGGGATCTCTTCGTTGAGCAATCGTGGGGGAAGACGAGGGGAACGGGAGCTGCTCAAGCCCTTTGCTGGGTCATCCCATGCAAAAGGCATAGTTCTGGAGAAGATTGGAATTGAGGCTAAGCAGCCAAACTCTGCTATCCGGAAATGTGCCCGTGTTCAACTGATCAAAAATGGCAAAAAGATTGGTGCATTTGTACCAAATGATGGTTACTTAAACTTCATTGAAGAGAATGACGAGGTGTTGATCGCCGGATTCGGACAGAAGGGACATGCTGTGGGAGATATTCCTGGAGTCAGATTCAAGGTTGTGAAGGTATCTGGTGTATCTCTTTTAGCTCtctttaaagagaaaaaagaaaagcccatgtctta 521 0.4338 MGSETFLEILLAVLLPPVGVFLRYGFGIEFWIDLLLTILDCFALCFLWQQGISSLSNRGGRRGERELLKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIGAFVPNDGYLNFIEENDEVLIAGFGQKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPMS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02430 173 ProSitePatterns Uncharacterized protein family UPF0057 signature. 10 25 IPR000612 GO:0016021
Bva03g02430 173 SUPERFAMILY Nucleic acid-binding proteins 67 171 IPR012340 -
Bva03g02430 173 ProSitePatterns Ribosomal protein S12 signature. 90 97 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva03g02430 173 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 66 173 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva03g02430 173 Pfam Proteolipid membrane potential modulator 6 40 IPR000612 GO:0016021
Bva03g02430 173 Gene3D - 61 173 IPR012340 -
Bva03g02430 173 PANTHER BNACNNG03140D PROTEIN 66 173 - -
Bva03g02430 173 CDD Ribosomal_S23 70 170 IPR005680 GO:0003735|GO:0006412|GO:0015935
Bva03g02430 173 Pfam Ribosomal protein S12/S23 67 171 IPR006032 GO:0003735|GO:0005840|GO:0006412
Bva03g02430 173 TIGRFAM uS12_E_A: ribosomal protein uS12 69 172 IPR005680 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02430 Bva-Chr3 20673522 20675800 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02430 48 173 Cytoplasmic Ribosomal Protein Gene Family AT3G09680 83.333 5.35e-67 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02430 K02973 - cpap:110814592 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02430 03 20673522 20675800 Bva09g00205 09 1039826 1047890 ECH
Bva04g02613 04 23225122 23226844 Bva03g02430 03 20673522 20675800 ECH
Bva13g01915 13 15568280 15569754 Bva03g02430 03 20673522 20675800 ECH
Bva03g02430 03 20673522 20675800 Bva03g02430 03 20673522 20675800 ECH