Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02417 ATGACGACCTGGAATCTTCtcgtgtttttcttttctctgttcACTGCATGTTATATGGCAGCAGCTAAAGTGGTGCTCATTGGGAACAATGTCACTCTTTCCTTCGACGCTATTGAAGCTAATTTCTCTCCAACACTCAAAGGATCTGGAGAATGCGGGGTATTATATTTGTCTGAGCCTCTTGACGCTTGTACAGCATTGACAAATAAAGTTGAACAACATCCAAATGCCAGTTACCcttttgttttgattgttCGAGGAGGATGTAGCTTTGAGGAAAAGGTGAGAAGAGCACAGAAGGCTGGCTTCAAAGCTGCAGTTGTCTATGATAATGAAGATAATGGTATCTTAGTAGCAATGGCAGGAAACTCAGCTGGCATAAAAATACCTGCTGTATTTGTTTCTAAAGCTTCGGGTGAAATCCTAAAGAAATACACTGGGTTGACGAACTTGGAACTGTGGCTAATTCcaagttttgaaaattcagCATGGTCTATCATGGCCATTTCATTCATTTCCCTACTAGCCATGTCTGCAGTGCTCGCCACTTGTTTCTTTGTCCGCAGGCATCGCATAAGAAGAGAAAGGCCACGAGCTTCTCGTGTCCGTGAATTCCATGGAATGAGTAGTCGTCTAGTGAAAGCAATGCCGAGTTTGATATTTACTTCTGTTTTAGAAGATAATTCTACATCAAGAACTTGTGCAATATGCCTTGAAGACTATAGTGTTGGAGAGAAGCTCAGGATTCTTCCCTGTTGTCACAGGTTTCATGCCATGTGTGTCGACTCTTGGCTTACCTCATGGAGAACCTTCTGTCCTGTTTGCAAGCGTGATGCAAGAACTGGTTTAAGTGATCTGCCACCTTCAGAATCTACACCTTTGCTTTCATCGGCATCCTCTTTAGTGTCATCTGCAAGATCATCATTTGTTTCATCTTCAGCTATACATATTGTCCCGGCAGTACAACGGTCTCCATCTGTTTCTCGTAACCACTCCCTTGCTAGTACCCCTTATATTCAGCCGTCTCTTAGGTCCTACCACCAATCCCCCTCTCTAAGCATCAGCCGAAGCTCCGTAGATCTTAGGAATGCATCCCAAATATCACAAGCTTCACATTTGATTTCTCCCCATTCTATGGGCTATCCATCTTTGTCATCTCTGAATTCAAGGTTCATCTCTCCACATATCCCAAGTTCAAGCAATGCTTCAGCAAGTTTTCTTGGTTCTTCTAGTCATCATCAGAATCCACTTCGTTATAGTGAATCAGCTGCAAGCTTTTCTCCATTTGCTTCTGCCCATTCTCTTCCAGAATGCTG 1316 0.4164 MTTWNLLVFFFSLFTACYMAAAKVVLIGNNVTLSFDAIEANFSPTLKGSGECGVLYLSEPLDACTALTNKVEQHPNASYPFVLIVRGGCSFEEKVRRAQKAGFKAAVVYDNEDNGILVAMAGNSAGIKIPAVFVSKASGEILKKYTGLTNLELWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPRASRVREFHGMSSRLVKAMPSLIFTSVLEDNSTSRTCAICLEDYSVGEKLRILPCCHRFHAMCVDSWLTSWRTFCPVCKRDARTGLSDLPPSESTPLLSSASSLVSSARSSFVSSSAIHIVPAVQRSPSVSRNHSLASTPYIQPSLRSYHQSPSLSISRSSVDLRNASQISQASHLISPHSMGYPSLSSLNSRFISPHIPSSSNASASFLGSSSHHQNPLRYSESAASFSPFASAHSLPEC 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02417 438 CDD PA_C_RZF_like 20 163 IPR044744 -
Bva03g02417 438 Gene3D - 20 153 - -
Bva03g02417 438 SUPERFAMILY PA domain 81 144 IPR046450 -
Bva03g02417 438 SMART ring_2 234 275 IPR001841 -
Bva03g02417 438 CDD mRING-H2-C3H2C2D_ZSWM2 233 276 - -
Bva03g02417 438 Pfam Ring finger domain 233 276 IPR001841 -
Bva03g02417 438 ProSiteProfiles Zinc finger RING-type profile. 234 276 IPR001841 -
Bva03g02417 438 SUPERFAMILY RING/U-box 212 287 - -
Bva03g02417 438 Pfam PA domain 81 142 IPR003137 -
Bva03g02417 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 281 IPR013083 -
Bva03g02417 438 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 354 - -
Bva03g02417 438 PANTHER PROTEASE-ASSOCIATED (PA) RING/U-BOX ZINC FINGER PROTEIN 2 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02417 Bva-Chr3 20610142 20614685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02417 21 437 C3H Transcription Factor Family AT1G22670 48.244 2.61e-117 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02417 K15692 - gmx:100791248 630.943