Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02349 ATGGCCTCCTCCTCCTCTCCAAAACGCTGCGTTTTTGTTGGGAATATACCGTATGATGCTACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGACCTGTTGTTTCATTCAGATTAGTTATTGATAGAGAAACTGGGAAGCCAAAAGGTTTTGGTTTCTGTGAGTATAAGGATGAAGAGACAGCTCTAAGTGCTCGCCGTAACCTTCAAGGCTATGAGATAAATGGCCGGCAATTACGTGTTGATTTTGCTGAAAATGATAAAGGTGCTGATAAAAATCGAGAACAGGGACGTGGTGGGCCTGGACTAGCGGCTAACGCTGACCCTCAGAAACAAGTAGGTGGACCAGCTGCCCAGGGGGAGGCTGTTCACCATCAGCCTATTGGTCTTCATATTGCCATCACAGCTGCAGCTGTTATGGCAGCAGCTTTAGGTGGCGCTCAGTCTAGCATCCAGTCAAATCAAAATGGTTTGCAAAGCCCACATGATCCTTTAACTCTACATCTGGCCAAAATGTCCAGGAATCAGCTGAATGAGATTATCTCTGAGCTGAAGGCAATGGCTACACGGAACAAGGAACTAGCTCACCAGTTGTTACTTTCACGACTGCAGTTGCCCAAGGCCCTTTTTCAGGCACAGATAATGCTAGGAATGGTGACCCCACAAGTGtTACAAATGCCAAATCTTAGACAGCTTTCAGGTCAAACCTCACAACCTTCAGCAAATGAGGGTCAGCTAGGTCAACCAGGGCTTCCTAATGCACAGAGCCAGTCTGGCATGATTCCCAGCATTCAAGAATCTCAAATCAACACTATAGTTCATAACCCTTTGGTTCCTATTCAATTTAGTGCACGTCCAAAGCCTCCTATGCAGCCTCGGATTCAGCTTCCACAACATCCAAGCAACCTTGTACAGCAGAGCACATTGCCGGGGCAATCTAATTTAACACTTCCTTCAGTGCACCACCAGTCTATAGCAAGTTTGTCTGCTAGACCACCGATTCCCCCTGCAATTTCTACTTCTTTGAACCAGCAAATGCAGTCCTTTATTCTACAGCATTCAGGACATGTTGGAAACTCAAGTGCAGCACATAGTATTCAGATGAATCGTCCTGATGCCAGCTTTCAGCCTGGCCCCTCCATATCAGCAGGTATTCTTCAGCCAATTAGTAAGGAAGCTGATAGATCAGCCAAAGCTCTTGAACATTCAAATTGGGCCAAGAGAAGTAGCACTTATCCAAACACGCCTTTGGCATCATTAGAGAAAACAAGTGTGGTTCATGACTCTTCAGAACCATTTAGTCGCCCTGCTAAGCTGATGAAATTGGACGAAGGAAGGAGCACCTCTTTTTCTGCTGGGCTGACTCCTGTCAACAATGGATTGTCCCAAGGTCTTGGAAGTAGCTCATTGCCTGCAAATGAGACTCCTAAAACAGAAGTGCAATACTCTGAGCAACAACAATCTTCCCAGCCCCAGCTTCCGCCTGATGTGGagtctattttactgcaacaAGTGTTGAATCTCACAGCGGAGCAGTTGAGCTCTTTGCCTCCGGAGCAGCAACAACAGGTCATTCATCTCCAGCAGGCTCTTCGCCGTGATCAGATCCGGTCCCAATA 1622 0.463 MASSSSPKRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGFGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADKNREQGRGGPGLAANADPQKQVGGPAAQGEAVHHQPIGLHIAITAAAVMAAALGGAQSSIQSNQNGLQSPHDPLTLHLAKMSRNQLNEIISELKAMATRNKELAHQLLLSRLQLPKALFQAQIMLGMVTPQVLQMPNLRQLSGQTSQPSANEGQLGQPGLPNAQSQSGMIPSIQESQINTIVHNPLVPIQFSARPKPPMQPRIQLPQHPSNLVQQSTLPGQSNLTLPSVHHQSIASLSARPPIPPAISTSLNQQMQSFILQHSGHVGNSSAAHSIQMNRPDASFQPGPSISAGILQPISKEADRSAKALEHSNWAKRSSTYPNTPLASLEKTSVVHDSSEPFSRPAKLMKLDEGRSTSFSAGLTPVNNGLSQGLGSSSLPANETPKTEVQYSEQQQSSQPQLPPDVESILLQQVLNLTAEQLSSLPPEQQQQVIHLQQALRRDQIRSQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02349 540 Gene3D - 496 536 IPR038192 -
Bva03g02349 540 MobiDBLite consensus disorder prediction 84 122 - -
Bva03g02349 540 SMART rrm1_1 10 83 IPR000504 GO:0003723
Bva03g02349 540 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 81 IPR000504 GO:0003723
Bva03g02349 540 MobiDBLite consensus disorder prediction 232 259 - -
Bva03g02349 540 Gene3D - 1 121 IPR012677 -
Bva03g02349 540 MobiDBLite consensus disorder prediction 361 384 - -
Bva03g02349 540 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 1 535 - -
Bva03g02349 540 SUPERFAMILY RNA-binding domain, RBD 5 104 IPR035979 GO:0003676
Bva03g02349 540 Pfam Hinge domain of cleavage stimulation factor subunit 2 160 226 IPR025742 -
Bva03g02349 540 CDD RRM_CSTF2_CSTF2T 11 85 - -
Bva03g02349 540 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 9 87 IPR000504 GO:0003723
Bva03g02349 540 MobiDBLite consensus disorder prediction 451 494 - -
Bva03g02349 540 Pfam Transcription termination and cleavage factor C-terminal 502 534 IPR026896 GO:0031124
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02349 Bva-Chr3 20154895 20162887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02349 11 84 Eukaryotic Initiation Factors Gene Family AT2G23350 29.730 3.92e-07 50.8