LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva03g02335	ATGGCAGGAGCTACAGGAAGAGCCATCCTCGCCCTCTCTCTCACCTCCAACCTCTCTGCATTTGCGCGCCTTTCCCATGGGAGGCGCCTTCCCCTTCTTAAACTTCCAAAACCCAATAGGGTTTTGCTAGGGTTTAGGCCTCTCTGCACTGTCACAACTAGCACCCCTACAACGGAGCCAGTTGAACTTGAGCCAGACCAAATCAAGCACTCCATGCTTCTCGAGAGACTGAGACTGAGGCACCTTAAGGATTCTACTAAAATTCCAGAAACTATGGGTGCCACAAAATCAGTTGCTTCTGCTGAGAAGGGTCGTGAGACTGAGCTGAACAagttggagaagaagaagacgaagCTCGTTGCAAGTTTTGATGCGTTGGGACTAACTGAGGAGGTAATGGGAACCTTCAGGGAGATGGGTATTGAGGTTCCCACTGAAATACAGTGTATTGGAATTCCTGCTGTATTGGAAGAGAAGAGTGTCGTTTTGGGATCTCACACGGGGTCTGGCAAGACACTGGCTTATATGTTGCCAATTGTTCAGTTGCTAAGACGGGATGAGCAATTGAATGGAATACACATGAAGCCCAGGCGTCCTCGAGCTGTTGTGCTATGCCCTACGAGGGAGTTGTCTGAGCAGGTGTTTCGAGTTGCAAAATCTATTAGCCATCATGCACGATTCAGATCTACCATGGTAAGTGGTGGTGGCCGGCTTAGGCCTCAGGAGGATTCACTTAATAATCCTATCGATATGGTAGTTGGTACACCTGGAAGGATTCTTCAACACATTGAGGAGGGAAACTTGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCTGACACCATGTTTGACCGGGGTTTTGGTCCTGATATACGCAAATTCCTTGGTCCACTGAAGCATCGTGCATCAAAACCCGATGGTCTAGGTTTTCAGACTATCTTGGTTACTGCAACCATGACCAAGGCTGTGCAAATGCTAATAGACGAGGAGTTTCAAGGCATTGTGCATCTACGCACATCGACACTGCATAAAAAGATTGCATCTGCTCGAcatgattttattaaactttCTGGTTCTGAAAACAAGCTGGAAGCATTACTGCAGGTTCTTGAGCCAAGCCTGGCTAAGGGGAACAGGGTGATGGTCTTCTGCAATACTTTGAATTCCAGTCGTGCTGTGGATCATTTTCTTGGTGAAAATCAGATTTCTACCGTCAATTACCATGGGGAAGTACCAGCAGAGCAGAGGGTTGAAAACCTCAAAAAGTTCAAGAGTGACGAAGAAGATTGCCCTACACTAGTTTGTACAGACTTGGCTGCTAGGGGTTTGGATTTGGATGTAGATCATGTTATCATGTTTGATTTTCCCTTGAACTCAattgaCTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGCGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAAAAAGGACTTGATCTTGGCTACTAGAATAGAGGAAGCAATAAGGAAGAATGAAAGCTTGGAGTCTCTTACTAAAGACAGTGTTCGGAGAGACGTTGCCAGGAATCAAATAACTGAGCAGAAGGGCAACAACAGAAAATTGGTTAAAgtttcaaaagcaaaaatcACTTCATCTGGTAGTCGCACCACTGCCACTAGAGGAAGCTTGGGCACAAAATCTAGCAAAGTATCCCCACCGGCAAAATCTTCAAAGGTAGGTATTAAGGTGTCAAAATCTGTAAAATCTTCTGGTGCAAGTAGCTCAAGAAAAGCTTCCTCTGGGAAGAAGCAAACAGGTAAAAAGGCTGGTGTCGTCAAATCTACAAGTTCTAAACTGAGTGTTGTAGGGTTTAGGGGGCGGAGTTCATCAAATAAGAAGCAACCAGTATCTTG	1886	0.4427	MAGATGRAILALSLTSNLSAFARLSHGRRLPLLKLPKPNRVLLGFRPLCTVTTSTPTTEPVELEPDQIKHSMLLERLRLRHLKDSTKIPETMGATKSVASAEKGRETELNKLEKKKTKLVASFDALGLTEEVMGTFREMGIEVPTEIQCIGIPAVLEEKSVVLGSHTGSGKTLAYMLPIVQLLRRDEQLNGIHMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNLVYGDIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRASKPDGLGFQTILVTATMTKAVQMLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAEQRVENLKKFKSDEEDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILATRIEEAIRKNESLESLTKDSVRRDVARNQITEQKGNNRKLVKVSKAKITSSGSRTTATRGSLGTKSSKVSPPAKSSKVGIKVSKSVKSSGASSSRKASSGKKQTGKKAGVVKSTSSKLSVVGFRGRSSSNKKQPVS	628

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva03g02335	628	MobiDBLite	consensus disorder prediction	522	565	-	-
	Bva03g02335	628	Pfam	DEAD/DEAH box helicase	145	327	IPR011545	GO:0003676\|GO:0005524
	Bva03g02335	628	Gene3D	-	86	340	IPR027417	-
	Bva03g02335	628	SMART	ultradead3	140	359	IPR014001	-
	Bva03g02335	628	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	152	487	IPR027417	-
	Bva03g02335	628	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	121	149	IPR014014	GO:0003724
	Bva03g02335	628	MobiDBLite	consensus disorder prediction	600	628	-	-
	Bva03g02335	628	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	33	551	-	-
	Bva03g02335	628	SMART	helicmild6	393	475	IPR001650	-
	Bva03g02335	628	Pfam	Helicase conserved C-terminal domain	364	475	IPR001650	-
	Bva03g02335	628	MobiDBLite	consensus disorder prediction	519	628	-	-
	Bva03g02335	628	Gene3D	-	349	563	IPR027417	-
	Bva03g02335	628	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	152	339	IPR014001	-
	Bva03g02335	628	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	33	551	-	-
	Bva03g02335	628	MobiDBLite	consensus disorder prediction	573	591	-	-
	Bva03g02335	628	CDD	SF2_C_DEAD	352	484	-	-
	Bva03g02335	628	CDD	DEADc	132	331	-	-
	Bva03g02335	628	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	364	514	IPR001650	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva03g02335	Bva-Chr3	20097185	20102597	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva03g02335	120	497	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.010	3.10e-40	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva03g02335	-		-	qlo:115975477	849.736