Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02306 ATGGTAAAGTTGAAACCGACCCGTTTCGGTTCCTCTCCTAATCTGCCTGCTCCAGAAACCGTCGTCCCCCACAGTGGGTCTGCGAGTACTTGGCCGTCGTACTTCCCAACACTGACGAAGTTCGAGCTCACCCACTTAATCAAAGACGCAGGGTACTTGGCACCTGGAGACTCGGCCTTGAAAGCCTCTCCCTCCTCTATCGAAGGCTCTGGTTTGCTCCTAGATTTCTCATTAATTACCCAGAATCGGAAATTGATAGTGTTTGAGTCATTACAGTCATCTGAGAGGTTTATAAACATTAGAATgGATCCTCATACTGAAGATCTGCCTCAATACATACATATAGATCAGAACGAATTTCTTAACAGAAAGCATAAGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAATACAATTTCACTGATCCTACTAGTGCATGTGGGGATAGGTGCTTGAATGTATTCACTAGCACTGAATGCACCCCTGGTTATTGCCCTTGTGGTATCTTTTGCAGGAATCAGAGATTTCAGAAGTGTGaaaatgcaaaaacaaaattgtttaaaactGAAGGCCGTGGGTGGGGTCTTCTGGCTGATGAGAACATAAAGGCAGGCCAATTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCTAAGCGGAGATCCCATGCTTATGAAATTCAAGGTCTCAAGGATGCATTTATCATTTGTCTTAATGCATCTGAATCTATTGATGCAACCAGAAAAGGAAGCCTTGCTAGATTTATAAATCATTCCTGTCAGCCAAATTGTGAGACAAGAAAATGGAATGTCTCGGGGGAAGTAAGAGTTGGAATATTTGCAAAACAAGATATTCCAATTGGAACAGAATTGGcatatgattataattttgaatggtTTGGGGGTGCAAAAGTTCGCTGCTTGTGTGGAGCAGCCATCTGTTCTGGATTTCTTGGAGCAAAATCTCGTGGTTTTCAGGAGGATACTTATCTATgggaagatgatgatgaaagGTATTCAGTTGATAAAATTCCACTATACGATTCTGCAGAAGACGAGGCTGAGCCTCCCTCAAAGGTccttaaaaaatcaaattcggAAAACTCGACGGACGTTACCATAAAAGCGGAGCAGCTATCAGAGTCCAGTTCTCTCAACGTTCAGCAGTCTGAGTTTTTGGGTGCCGACAAGATAAAAAGCGAATTAGGAAGTGAGGAATCCAAAATGTATGCACAGGAAACTCAACAAAAGAATGCAATGATTCCACGTATCCAAAGTAATCACACTGAACCTGGGTCTACCAAAAAACCCAaggcaaataaaaataaaaagttggcACAGAAGCAGGTGGATGCAAAATCTGCTGCTCTACTCTTATCTTCCAAGGAAGCACAAGAGGAGATTTTAAGAAATGAGgaaataaagaatgaaGCTAATGCTGCGCTGGATTCCTTATACAATGAAATTCGACCTGCCATCGAAGAACACGAGAGGGATACTCAAGACAGTGTATCAACTTCTGTAGCAGAGAAGTGGATAGAAGCTTGCTGCTTGAAATTGAAGGCAGAGTTTGATGTTTACTCCTCAATCGTCAAAAATTTTGCTTGCAGGACACGCGGCGAAGCAAAAGCTTCCCAAGTAGACAATGAAAACGAAATCAAGCTTTTGACAGGCTG 1691 0.3974 MVKLKPTRFGSSPNLPAPETVVPHSGSASTWPSYFPTLTKFELTHLIKDAGYLAPGDSALKASPSSIEGSGLLLDFSLITQNRKLIVFESLQSSERFINIRMDPHTEDLPQYIHIDQNEFLNRKHKKQKEEDIAICECKYNFTDPTSACGDRCLNVFTSTECTPGYCPCGIFCRNQRFQKCENAKTKLFKTEGRGWGLLADENIKAGQFVIEYCGEVISWKEAKRRSHAYEIQGLKDAFIICLNASESIDATRKGSLARFINHSCQPNCETRKWNVSGEVRVGIFAKQDIPIGTELAYDYNFEWFGGAKVRCLCGAAICSGFLGAKSRGFQEDTYLWEDDDERYSVDKIPLYDSAEDEAEPPSKVLKKSNSENSTDVTIKAEQLSESSSLNVQQSEFLGADKIKSELGSEESKMYAQETQQKNAMIPRIQSNHTEPGSTKKPKANKNKKLAQKQVDAKSAALLLSSKEAQEEILRNEEIKNEANAALDSLYNEIRPAIEEHERDTQDSVSTSVAEKWIEACCLKLKAEFDVYSSIVKNFACRTRGEAKASQVDNENEIKLLTG 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02306 563 SMART shorttest3 131 183 IPR006560 GO:0005634|GO:0018024
Bva03g02306 563 ProSiteProfiles AWS domain profile. 131 182 IPR006560 GO:0005634|GO:0018024
Bva03g02306 563 ProSiteProfiles Post-SET domain profile. 308 324 IPR003616 -
Bva03g02306 563 ProSiteProfiles SET domain profile. 184 301 IPR001214 GO:0005515
Bva03g02306 563 MobiDBLite consensus disorder prediction 351 365 - -
Bva03g02306 563 PANTHER SET DOMAIN PROTEINS 102 504 - -
Bva03g02306 563 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 102 504 - -
Bva03g02306 563 SMART set_7 184 307 IPR001214 GO:0005515
Bva03g02306 563 SUPERFAMILY SET domain 109 321 IPR046341 -
Bva03g02306 563 MobiDBLite consensus disorder prediction 1 23 - -
Bva03g02306 563 MobiDBLite consensus disorder prediction 409 452 - -
Bva03g02306 563 Pfam SET domain 195 301 IPR001214 GO:0005515
Bva03g02306 563 MobiDBLite consensus disorder prediction 412 438 - -
Bva03g02306 563 Gene3D SET domain 81 338 IPR046341 -
Bva03g02306 563 MobiDBLite consensus disorder prediction 351 372 - -
Bva03g02306 563 Coils Coil 466 486 - -
Bva03g02306 563 Pfam AWS domain 144 181 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02306 Bva-Chr3 19942134 19946984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02306 166 323 C2H2 Transcription Factor Family AT2G23740 35.196 1.78e-21 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Bva03g02306 SET 7.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02306 - - lang:109335575 681.789