Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02287 atgaaaacgcCGGCCGACGGTACGGCCGGTGCTGCCACAACAAATCCATGCGAAGGAGGAGAAAAGAAGTGCATAAACCCGGAGCTCTGGCAAGCTTGTGCGGGGCCGCTGGTGAACCTGCCGCCGGCTGGGACTCATGTCATTTACTTCCCTCAAGGTCACAGCGAACAGGTTGCAGCGTCTTTAAAGAAAGATGTGGATGCCCAGATTCCAAACTACCCGAATCTTCCCTCAAAATTACTGTGTCGCCTTCACAATGTCACCTTGCATGCTGACCCAGAAACAGATGAAGTATATGCTCAGATGACACTTCAACCCGTGCCTTCTTACGACAAGGATGCATTATTAAGATCAGATCTTGCCCTCAAGTCCAGTAAGCCACAACCTGAGTTCTTCTGCAAGCAATTGACAGCCAGTGACACCAGTACTCATGGAGGATTCTCTGTACCCCGCCGTGCAGCAGAGAAGATTTTTCCCCCTCTTGATTACTCTATGCAACCACCTGCTCAAGAACTCATTGCAAGGGATTTGCATGAGAATGTTTGGACATTCCGCCATATATATCGTGGACAACCAAAGCGTCATTTACTTACGACTGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTTTTTGCTGGAGattctgttttatttatacGAGATGAAAAGCAGCAACTACTTTTGGGAATCCGTCGAGCTAACAGGCAACCTACAAACTTATCATCCTCAGTACTATCAAGTGATAGTATGCATATTGGAATTCTGGCAGCTGCAGCTCATGCTGCTGCGAATAATAGCCCCTTCACTGTGTTCTATAATCCTAGGGCAAGTCCCTCAGAATTTGTTATTCCTTTAGCCAAATACTACAAGGCTGTCTATAGCCACCAGATATCACCTGGCATGCGCTTCCGGATGATGTTTGAAACTGAAGACTCTGGAACAAGAAGGTATATGGGTACGATTACGGGCATCAGTGATCTGGATCCTGTGAGATGGAAAAACTCACAATGGCGTAATTTGCAGGTCGGTTGGGATGAATCAACTGCCGGGGACAGGCGCAGCAGGGTCTCAATCTGGGAAATTGAACCTGTGACTGCCCCATTTTTCATCTGCCCACCTCCATTCTTCAGATCCAAGCGACCAAGAGAGCCGGGAATGCCAGATAATGAACCCTCTGATTTTGATAGCGTTTTCAAGCGGACAATGCCATGGCTTGGTGATGATATTTGCATGAAGGATCCCCAAGCTCTCCCTGGACTAAGCTTAGTTCAATGGATGAATATGCAACAAAATCCTGCCTTAGCTAGCTCTTTACAGCCCAATTACTTGCATTCCTTGTCTGGGTCTGCGCTACAAAATCTTCCCGGTGCAGACATTGCCCGTCAGTTAGGATTTTCTGCTCCACAAATTCCTCAGTCAAACAATGTAGCCATCAATGCTCGGCTACTTCAGACTGCACAACAGCTGGATCACCTTCAGAAGCTACCATCCACATCTAATCCATTGGGAACAGCAATGCAGCCCCCACAACAGTTGGGTGACATCACAAGGCAGAATTTGGTGAATCAAGCTCAGGCCCAGCTTCTGCATCCTCAGAATCTTGTTCAGACAAACAATCTTCTTCAACAGCAGCAACCATCCATTCAGAACCATCAGATCCATCGAAACCTCGCTCAGAACTCACAGCAGCAGCCACAGACAATTATGGGTCAGAGTCAACAACAAAACCTGGTTCAATCTCCCATGCCTGATCAAGTTCATCAACAATTACAAATGTCTGACAATCAAATTCAGCTTCAATTGTTACAGAAGTTACAACAGCAACAACAGTCGCTTTTGGTACAGCAATCTGCATTGCCACAGCCTCCTCAACTTGCCCAATTCCAAGACCAGCAGAAGCAGCTTTTAGATGTGACACAAAACTATTCTAGGTCTTTAATACCTGGTCAAGTGCTGGAGATTCCTCCAATGCTTCAAAACTCACTCCCTGAGGCTAGTTCTAATCCACATCAGATGACAAAGATTAATAGCCAAACCAATATTCAGTTCTCTCATATGCCTCAGCAGCCAAAGCTTCAACAGCAACCTAGCCCACTGTCTGAAATATCCGGGCACATGGGACTTCCTCCTATGCCTAACACCAACCAGCTCTCTACTGCTGGTAGTAGCATACTCACTGGAGCAGCTGGAGCTGGACAATCTGTGATTACTGATGATGTTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCTAATGTACTTCAACCGGCAATGAATACCCGGATGCATAGGAATACAACAATGGGGGATGACATGGCTCAATCTACTGCAACAATCTTGAGTCCAAGTGTTTTAGAAACCATGCCATCGAATGTAAGCTTGGTGAAGGATTTACAACCGAAATCTGAAGTTAAGCCTTCTTTGAACATTTCCAAGAGTCAAAATCAAGGAAATTTCACCCCTCAAACATACTTGAATAGCGGGACTGCCCATACAGATTATTTGGATACATCATCTTCCACAACTTCAGTTGGCCTCTCTCAAAATGAAACTCATGCACATCAGACTAACAACCCATTATACAATCCGCAGTCAATATTGTTCAGAGACAATAGTCAAGATGGGGAAGTTCACGCAGATGTTAGGAGTCATGTTCCATTTGTGAATAACATTGATGGTCAATTGGGAATGCCACCGAACACAGATCCTCTTTCAACCAAAGGCACAGGTGGGCTGGGGAAGGATTTGTCAAATCATTTTCCATCAGGAAGCATGCTTggtaattatgaaaataacagAGATGCTCAGCAGGAACTTTCATCTTCAATGGTGTCACAGTCATTTGGAGTTCCTGATATGGCCTTTAATTCAATTGATTCCACAATAAATGATAGCAGCTTCTTAAACAGGGGTGCATGGGCCCCACCTCCTCCACCACCACAATTTCAACGGATGAGGACATATACAaagGTGTACAAACGAGGAGCTGTGGGAAGGTCAATAGACATAACACGATATTCAGGGTACGAGGAACTTAAACAAGATCTGGCTCGAAGATTTGGCATAGAGGGACAATTGGAGGATCGGCAAAGAGTTGGCTGGAAACTTGTTTATGTGGATCATGAGAATGATGTTTTGCTTGTGGGAGATGACCCCTGGGAGGAGTTCGTGAACTGTGTCCGCTGCATCAAAATACTGTCTCCTCAGGAAGTGCAACAGATGAGCTTGGATGGTGATTTTGGTAATGGTGGCCTTCCAAATCAAGCTTGCAGCAGCTCTGATGGTGGGAATACTTA 3302 0.45 MKTPADGTAGAATTNPCEGGEKKCINPELWQACAGPLVNLPPAGTHVIYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCRLHNVTLHADPETDEVYAQMTLQPVPSYDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELIARDLHENVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGDRRSRVSIWEIEPVTAPFFICPPPFFRSKRPREPGMPDNEPSDFDSVFKRTMPWLGDDICMKDPQALPGLSLVQWMNMQQNPALASSLQPNYLHSLSGSALQNLPGADIARQLGFSAPQIPQSNNVAINARLLQTAQQLDHLQKLPSTSNPLGTAMQPPQQLGDITRQNLVNQAQAQLLHPQNLVQTNNLLQQQQPSIQNHQIHRNLAQNSQQQPQTIMGQSQQQNLVQSPMPDQVHQQLQMSDNQIQLQLLQKLQQQQQSLLVQQSALPQPPQLAQFQDQQKQLLDVTQNYSRSLIPGQVLEIPPMLQNSLPEASSNPHQMTKINSQTNIQFSHMPQQPKLQQQPSPLSEISGHMGLPPMPNTNQLSTAGSSILTGAAGAGQSVITDDVPSCSTSPSTNNCANVLQPAMNTRMHRNTTMGDDMAQSTATILSPSVLETMPSNVSLVKDLQPKSEVKPSLNISKSQNQGNFTPQTYLNSGTAHTDYLDTSSSTTSVGLSQNETHAHQTNNPLYNPQSILFRDNSQDGEVHADVRSHVPFVNNIDGQLGMPPNTDPLSTKGTGGLGKDLSNHFPSGSMLGNYENNRDAQQELSSSMVSQSFGVPDMAFNSIDSTINDSSFLNRGAWAPPPPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRVGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02287 1100 MobiDBLite consensus disorder prediction 909 945 - -
Bva03g02287 1100 MobiDBLite consensus disorder prediction 1080 1100 - -
Bva03g02287 1100 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677
Bva03g02287 1100 ProSiteProfiles PB1 domain profile. 988 1072 IPR000270 GO:0005515
Bva03g02287 1100 MobiDBLite consensus disorder prediction 923 945 - -
Bva03g02287 1100 Pfam AUX/IAA family 987 1073 IPR033389 -
Bva03g02287 1100 Pfam Auxin response factor 258 341 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bva03g02287 1100 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677
Bva03g02287 1100 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1094 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bva03g02287 1100 SMART B3_2 132 234 IPR003340 GO:0003677
Bva03g02287 1100 Gene3D - 983 1077 - -
Bva03g02287 1100 Gene3D - 296 367 - -
Bva03g02287 1100 MobiDBLite consensus disorder prediction 809 861 - -
Bva03g02287 1100 MobiDBLite consensus disorder prediction 558 584 - -
Bva03g02287 1100 Gene3D - 130 233 IPR015300 -
Bva03g02287 1100 CDD B3_DNA 131 223 IPR003340 GO:0003677
Bva03g02287 1100 PANTHER AUXIN RESPONSE FACTOR 1 1094 - -
Bva03g02287 1100 SUPERFAMILY DNA-binding pseudobarrel domain 121 261 IPR015300 -
Bva03g02287 1100 SUPERFAMILY CAD & PB1 domains 1001 1066 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02287 Bva-Chr3 19812410 19819368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02287 1 475 B3 DNA Binding Superfamily AT1G19220 71.339 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bva03g02287 AUX_IAA 3.7e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02287 - - ccaj:109803454 1704.88