Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02279 ATGCAGCAGTCAATGGAATTTGCATCGCTGGAGTTTATCCAAAGTTGGACCAAAACTGCTACGCAATTATGGGTGAATTGTTTGAAGCAGAGGATACAGTCGGAAAAATCTGTAAAGCTGACGTCTGAGTATTGTATGAAGACAATGAAGATTCAAAGGAAGACAGCGTCTCATCTTCAGGCTCTTGATCATTTTTATACAGGTCCTAAAAATTTCACTCCTGCTTGTCGAGAGGATCAAGGACCAGTGAAAAGGAGGAAGgtCTCCAATGATGCAATTGAAACCCACTATGATTCTAGTAAGACATCCCAAGTGAAGAAACATGGAATTGGAAAAGGTTTGATGACTGTTTGGAGGGCAACACATCCTGATGCTGGAGACCTTCCTATTGACTTTGGATTTATCGGGCAAGAAAATGCTGGATTGCCTCAAAGCTCAAATTCTATATTACAGAAATCAACCTGCGGGAACAAGAAGTCATGGAAGACACTAGCCACGACTGGGAGgctgaaaaataaattgcagaataagagagataaattACAGGAGAAGAGGAAGCTTTTTGTGGAAAGAAGAATgGTGGAATCTAACAAAACTGCAAGTAAGAAGCAGtcacaaaaggaaaaatgtgaACTTGCTTTAGATAAAGTAAGATCTCAGGAAGAGTTTGATCGAATTGCAATGCTAATTGATGATGAAGAGCTAGAGCTGAGAGAGTTACAAGCTGGACCAGATCCACTTATATGTTCTGATCATCTTGTGGGCAGTGGAATGCTTGGTTGCTCACTTTGCAAAGATTCTCTAGCCAAGTTTCCACCAGATACTGTTAAGATGAAGAAACCCATGTGTTTGCAAGCTTGGGACTCTTCTCCAGAAATTGTTAAGAAACTATTTAAGgttttccattttctttatacATATGCTGCAGTTGTTGATGTATGTCCCTTCACTCTTGATGAATTTGCTCAAGCATTTCATGATAAGGACTCAATGCTTCTTGGAAAGATTCATGTGGCACTTCTCAGACTTCTCCTATCTGACATTGAAGTGGAGCTTACCAATGGATTTTTGCCTCATTTGAATAAATCCTGCAATTTTCTTGCATTGCTTCACTCAGTTGATAATCGGGGCTACTCTCTGGACTTCTGGAAGAGATCTCTAAACCCTCTTACCTGGATAGAAATACTCCGTCAAGTATTGGTTGCTGCTGGTTTGGGTTCTAAGCAAGGTATGCGAAGAGAAGTCCTCAGCAAGGAACTAAATCTTATGGTGAACTATGGCCTACACCCTGGAACCTTGAAGGGTGaattattcaaaatcttaTCAAAACAAGGAAACAATGGGTCGAAAGTATCTGAACTGGCTAATTTAATTGCGATTCTAGAATTAAAACTTGCCAGCACAAGAGAGCAGCTGGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCTTCGTCTGCATATCGACTACGTATGAGCTCTATCATGAAGGACATTGATGATTTTCAGTCAGATACAGAGAACTCGGGGAGTGTTGATGATGAACTTAATGACAGTGATTCCTGTAGCAGTGGTGACGATTTGGAATGTGATTCAGGAAAAcctaatttaagaaaatttagaagagctaaaatttgtaaaattaaaaacaatatgcTGACAATGCCCACTGAAATTGATGAGAGCTATCCTGGCGAAGTATGGTTGTTAGGACTGATGGAGGGTGAATATTCAAATCTGAGCATTGAAGAAAAGTTGAATGCGCTGGTGGCTCTGACTGATCTGCTTAGTTCTGGATCCAGCATCAGAATGaagGACCCAACAAAAGTTACAGCTGACTACAATTCGAGCATCCAACATCACGGTTCTGGGGCAAAAATAAAGAGGTCTTCAGTAAGAAAGCCTGGGCCATTTTGGAACCAAATTGTGCAAATGCAATGTGTCAACCAAGTGTACTCTTCACTGGATTCTCACCCCTATCCTGTAGATTCCTCGtcattattatcaaattcatATAATCATACAGAATCTTTTGGGAAGGGAAAGGAAGCAGAAGTAACAAGTTTAACTGATTCACATACTATTCAATCAGTGTTCTTGGGATCTGATCGTAGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGTGGATGACCCTGGCCATCGGAGGGTATATTTTGAATCTTCCGAAGATGGTCACTGGGAGGTGATTGATACTGAAGAGGCATTGTGCGCTTTGTTGTCAGTTCTGGATGACAGAGGCAAACGGGAGGCTCTTCTTATTGAATCTTTAGAAAAGCGGCAAGCATCACTTTGCAGAGCTATGTCCAGGGTAATGGCTCATTGTACTGGAATGGGGCATCTGTCATTTTCTGATCAGTCTGAGCTGGATATGGTTGCAGATGATGGTTATTCCCCAGTATCTGATGTGGAGAACCTCAGCCTTACTGAGACTGCAAAAGACCATCTGCCTTCAGCTGGAGCTGTAATGCTAGAAGCTGGAAAGAAGGGAGaggagaaagtgaaaaaatggATCCGTCTTCAGGCATATGATTCATGGATCTGGAACTCCTTTTATTTAGATCTTAATGTTGTAAAATATGGGAGAAGATCTTATTTGGATTCTCTGGCTCGATGTGAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAGAATTTGCCATACAACATTCGAGCTTGATTTTGATTTAGAGGAAAGATACACAATCCACACAGCCACATGCAGGGGGAAAGAAGACAGCAATACATTTCCAATTCATAAAGTCTTATCATCACAGATCCAAACGCTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTGGTGGGTGCTTGGAGAAAATCTGCTCATAAACTATGGGTCAAACGACTTAGACGGACCTCAACTTTGGTGGAACTTTTACAGGTTGTTGGAGATTTTGTTGGTGCCATCAATGAGGACTGGTTGTTTGAATACCATTTTCCAGAAGGTGTTGTTGAAGAAATCATTGTCTCATTTGCATCTATGCCCCATACATCATCCGCCCTAGCTCTATGGTTAGTGAAATTAGATGCCATAATTGCTCCGTACCTGGACAGAGTCCATCCTCAAAAGAAGCAGGGAATCAGCAAGAGGTA 3185 0.3934 MQQSMEFASLEFIQSWTKTATQLWVNCLKQRIQSEKSVKLTSEYCMKTMKIQRKTASHLQALDHFYTGPKNFTPACREDQGPVKRRKVSNDAIETHYDSSKTSQVKKHGIGKGLMTVWRATHPDAGDLPIDFGFIGQENAGLPQSSNSILQKSTCGNKKSWKTLATTGRLKNKLQNKRDKLQEKRKLFVERRMVESNKTASKKQSQKEKCELALDKVRSQEEFDRIAMLIDDEELELRELQAGPDPLICSDHLVGSGMLGCSLCKDSLAKFPPDTVKMKKPMCLQAWDSSPEIVKKLFKVFHFLYTYAAVVDVCPFTLDEFAQAFHDKDSMLLGKIHVALLRLLLSDIEVELTNGFLPHLNKSCNFLALLHSVDNRGYSLDFWKRSLNPLTWIEILRQVLVAAGLGSKQGMRREVLSKELNLMVNYGLHPGTLKGELFKILSKQGNNGSKVSELANLIAILELKLASTREQLESLICSTLSSDITLFEKISSSAYRLRMSSIMKDIDDFQSDTENSGSVDDELNDSDSCSSGDDLECDSGKPNLRKFRRAKICKIKNNMLTMPTEIDESYPGEVWLLGLMEGEYSNLSIEEKLNALVALTDLLSSGSSIRMKDPTKVTADYNSSIQHHGSGAKIKRSSVRKPGPFWNQIVQMQCVNQVYSSLDSHPYPVDSSSLLSNSYNHTESFGKGKEAEVTSLTDSHTIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLEKRQASLCRAMSRVMAHCTGMGHLSFSDQSELDMVADDGYSPVSDVENLSLTETAKDHLPSAGAVMLEAGKKGEEKVKKWIRLQAYDSWIWNSFYLDLNVVKYGRRSYLDSLARCESCHDLYWRDERHCRICHTTFELDFDLEERYTIHTATCRGKEDSNTFPIHKVLSSQIQTLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVVGDFVGAINEDWLFEYHFPEGVVEEIIVSFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGISKR 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02279 1061 Coils Coil 451 471 - -
Bva03g02279 1061 SMART testlast3 291 350 IPR018501 -
Bva03g02279 1061 Pfam DDT domain 294 347 IPR018501 -
Bva03g02279 1061 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 71 1056 IPR044977 GO:0006357
Bva03g02279 1061 Coils Coil 164 191 - -
Bva03g02279 1061 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 703 776 IPR028941 -
Bva03g02279 1061 ProSiteProfiles DDT domain profile. 291 350 IPR018501 -
Bva03g02279 1061 PANTHER OS07G0619600 PROTEIN 71 1056 - -
Bva03g02279 1061 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 573 610 IPR028942 -
Bva03g02279 1061 MobiDBLite consensus disorder prediction 514 532 - -
Bva03g02279 1061 MobiDBLite consensus disorder prediction 511 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02279 Bva-Chr3 19768400 19779231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02279 183 1043 Homeobox Transcription Factor Family AT5G44180 28.023 4.92e-75 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Bva03g02279 WSD 1.7e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02279 - - aprc:113853612 1465.67