Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02252 ATGTGGCCAGTCCCTACCAACGCGACAACTGTAGCTCCCGCTGCCGATTCTTCATCATCTGAATTAATATGCAAAGATGGACGCAAGATTCGTGTTGGTGATTGTGCACTTTTCAAGCCACCCCAAGATTCCCCACCTTTTATTGGAATAATCCGCAAGTTAACTTtgaacaaagaagaaagtccAAGTTTAGGAGTGAATTGGCTGTATCGACCTGCTGATCTGAAACTTGCAAAAGGGATCTTGCTGGAAGCAGCACCAAACGAGGTGTTCTACTCCTTTCACAAGGATGAAATACCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCGTAAAGGTGTTGAACTTCCTTCAGGGATATCCGCATTTGTCTGTAGACGAGTGTATGATATTGACAAAGAGCGTTTATGGTGGCTAACTGATAAGGACTACATTAATGAACGACAGGAAGAAGTTGATCAGCTATTAGACAAGACAAGACTAGAAATGCATGGGGCAGTGCAGTCGGGAGGCCGTTCTCCAAAACCTTTAAATGGTCCAACATCAACACCATTGAAATCTGGTTCTGATAGCATTCAGAACAGTTCTTCCTTTGGTTCTCAGGGCAAggggaaaaagagagaacGGGGTGATCAGACGTCAGATTCATCCAAAAGGGAGCGGTTAACTAAAACAGAAGATGGGGATTCTGGTCAATTTAGGCTGGAAAGCATGTTAAAATCTGAGATTGCTAAAATTACAGAGAAAGGTGGTCTTGTAGACTTTGAGGGAGTTGAAAGACTGGTACAACTCATGCAACCTGACAGTAGTGATAAGAAAATAGATTTGGCTGGGCGAATAATGCTGGTTGATGTAATAGCTGTAACAGATCGATATGAGTGTCTTGGTTGGTTTGTACAGCTCCGGGGTTTGCCTGTATTGGATGAATGGCTCCAGGAGGTTCATAAGGGGAAAATAGGTGATGGTAGTTCAGCTAAAGAAAACGAAAAGTCTGTTGAGGAATTCCTATTAGCTTTACTTCGTGCATTGGATAAGCTTCCTGTGAATCTTCATGCACTGCAGACCTGTAATGTTGGAAAATCTGTGAATAATTTGCGTAGTCATAGAAATTctgaaattcaaaagaaagctAGGAGTTTAGTGGACACATGGAAGAAACGTGTTGAAGCTgaaatgaatatgaatgatTCAAAATCTACCCCTAGCCGTGGTGTTTCTTGGCCAACCAAACCAGCACCTTCTGAGGTTTCGCATGTTGGCAATAGGAGAACTGGGGGATCTGTTGATACTGCTGCAAAGAGCTCCACTTCGCAGCCCATGGCATCTAAAAATTCCCAAGTTAAGCTTAGCACTGGAGAAGCATTGTCTAAATCCTCTTCCTCCCCTGGTTCAACTAAACAAATGACCACTTTGGTGGGTAGTAATTCAAAGGATCCAAACTCTAAAGTGGTGGTTGGAGCTGGAACATCAGATGTACCCCTGATACCTATTAAGGAGGAAAAGAGTAGCAGTTCTAGCCAGTCACAAAACAACAGCTTATCTTGTTCAAGTGAACATGCAAGGAGCTCCAGTGCTGTGTCTCTGAGTGCAAGCAAAGTTCCAGGTGGTACATCTCGATCCCGAAAGTCAAGTAACGGGCTGCATGGTTCAGCTGCTAGTGTAGTTCAGAAGGAGCTGAGTTCTGGAAAGAACTCAAGCAGAAATTCCCCTTCTGAAAGGGCATCACCGACCCAGGTATCCCATGAAAAATTACCCGATGCGCCTCTTCCTGATCATGGGAATAATCAGCGACTCATTGTCAGGTTGCCAAACGCTGGTCGTAGTCCTGCCAGGGGATCTAGTGGGGGCTCCAGTGAGGATGCGGCTATTTCTTGTGGGAAAGCCTCACCTCCTGTGGATAAGCACGAGAGTCATGACAGAAGAGCGAAAGCCAAAACTGATGCTTTGCCCACTAATGTTGCGTCTAACGTGACCACTGATGGGTGTGATGCTAATGTTGCCCTGACTGGTTTTGAGGAAGGTAATGGATCACCGATGGATGATGAACTTTGTAGGGCCAGTGAAGATGGTGATAAAGTGGCAGAAACGTCAAAGCCTACTAGTTCTTTACCAGGATTTGTTTCCAGATCTGGCCAGACATATGATGCTTCTTTAAGTTCCATAAATGCACTAATCGAAAGCTGTGCAAAAATTTCTGAATCAAGTGTTTCTGTGTCCCCTGGAGATGATGTTGGGATGAACCTACTTGCAACTGTGGCTGCTGGGGAAATATCCAGATCTGAGAATGTTTCACCTATGGCTTCTCCTGGGAGGAAGTCGCCTGTTGCAGATGAGTCATTTTCAGGCAATGATGGAAAGTCCAAACGTTCGGGGGAAGCTGTTGCTTGCACTCCTGGACAATCTGATGGTGGCACTGCTGTAGAACACATGAACCATGTAGATCCCTTGCggtttaaaaatgatttgagGCATCCTGTTACACCAACATCATGTGATTTGGCTGGAGATGGTGAAGCCACTTCATCTAGTTGTACAGAGAAAGCTGTTGATGTCAGAACTCAAATGAATTCCTCCCCAACAGATTTATTACAGAATGCAGAAGGTCCATCCTTAAGGACTGAAGTTAAAGAGGATGCTTCTGAAACTCTGTTGTCTGCTAAGGAGCCTCTTGTGGAGCCTGAAGGAATGCATCAGTTTCATGAACAGCGGGAATTAGGAACTCACCCGGGTAAAGGTGGCAGTGGTTCAgattctatattaaaaaaaagggattCCTCTTTTGATGAAAATCAGAAGGTTGAATGTGTAGATGAGGTAACCATGGAGAATAATTCAACATTGATATCAGAAGCGGCTGGTGTCAGTGTAAAGGCTGATAAGGAAGCCAATGAGAAATCACCTGAATCATCTTCAGATGTGGGTAATGAGAACCAAATTAATGTGGAGAATGCTACAGGTACTGTCGATGCTGTACAAAAGCCATCCCCAATAGCAGAAAATTGTCAATCCATGGAGGGAACAAAAGAGGATGCGGTGCTAGCTTCTGCTTCATGCGGTGCTTTGATTGAATCTAAGTCCATAAATGCTGAAAGCATGAAGCTAGGTTTGGTTGAAAGGAGAATGGACTTGGACTCGTCTGTTTCAACTAATATTAGTGAGTGTGCTGAGGGGAATTTGGACAGGAAAGAGGTTCCTGGTCACTGTTCTGGCTCATCAGTTCATGCCGAGTCACCAAGAATTCCTGTGCAACTTAGCGAGGTCCACAAAAAATCTTCTGGCTGTAACTTGGACAAAGTTGAATCAGAGGATGCAGCAGAACGGCATGCATCCAGTGCTAATGCTTCACTTGCTGCTGCAGGTTCAGATGTAGCAGTAAAGCTGGACTTTGATTTGAATGAGGGCTTTCCTGTTGATGAAGTGAGTCAAGGGGAGAATGTCAGACAGGAAGAACCAATCTCATCATCTGCTGTTTGCATGCCTTGCCCGGTTCCTTTTCCCATTTCTTCTATGTCTGCTGGATTCCATGCTTCAATTACTGTGGCTTCAGCTGCAAAAGGGTCATTTGTTCTTCCAGAAAACCCATTAAGGAGTAAGGGTGAACTTGGATGGAAAGGATCTGCTGCTACAAGTGCATTCCGACCAGCAGAGCCTAGGAAAAATGCAGAGCCGCTGTCAAATACAAGTGATGCTCCTTCTGTGGATAACACTTCTTCAAAGCAAGGTCGTGCTCCTTTAGATTTTGATCTGAATGTGCCAGACCAAAGAAGTTTTGAGGATGTGGCTTCCCATGCTTCTTCACGGCAGAATAGTTCAGAAGCTGGACCTCATGATCGTGGCAGTGCTGGACTTGATCTTGATTTGAACAGAATTGACGAGACTCCTGATGCTGGGCCCTTCTCTTTGAGCAAATTTGATATTCCTTCTTTACCAAATAAGCCTTCATTGTCTGGTGGATTATCTAATGGTGGAAATGTTTCAAGAGACATTGATTTAAACAATGGGCCAGGCCTTGATGAAGTTGGCATTGAAGCTCCAGCACGTAGTCAGCAGATAAAAAGTACATTACCATTTCCATCAGCTGTTCATGGTGTAAGAACTAATAATGCTGAATTTGGGAACTATTCAACATGGTTTCCTTCAGGCAGCTCCTACTCTGCAATAACTGTCCCACCACTTTTGCCTGGTCGAGTGGAACAGAGCTATGTGGCTGGTGCGCGAGCACAGCGAATTTTGGGTCCTCCAGGTAGCACGTCTTTTGCTCCTGATATCTACAGGGGGCCAGTTCTTTCATCTTCCCCAGCTGTTGCTTATCCATCTGCTGCACCATTTCAATATCCAGGATTTCCGTTTGAAACCAACTTCCCTTTGTCTTCAAATTCCTTTTCTGCGTCTACAGCATTTATGGATTCCTCCTCAGCTGGTGGACTTTGCTTTCCTACTATGCCCTCACAGTTGGTAGCCCCTGGTGGTGTCATCTCATCTGCTTTTCCCCGACCCTATGTTATGAATCTTCCAGGTGGTACAAGCAATGTGATACCTGAAACTAGAAAATGGGGCAGTCAAAGTTTGGATCTTAATTCAGGCCCTGGTGGTACAGATTCAGAACGCAGAGATGATAGATTGGCTTCAGGACTGAGGCAACTATCTGTTCCCAATTCACAAGCACCAATGGAGGAACAAATGAAGATGTTCCAGGTGCCAGGAGCTACAAACAACCCTAATGGCAGTAGAGGACGAAGGCTTCTCAAAGGAAAACTTGGCAAGTTGCTTTTGTGGGAAATACTGGATATATTGTGGAGGATGTTGGATTTGTTGAGCCATGAGCTAGACTCCAACAGATTGTCCCTTTGCGGATA 4865 0.4386 MWPVPTNATTVAPAADSSSSELICKDGRKIRVGDCALFKPPQDSPPFIGIIRKLTLNKEESPSLGVNWLYRPADLKLAKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLRKGVELPSGISAFVCRRVYDIDKERLWWLTDKDYINERQEEVDQLLDKTRLEMHGAVQSGGRSPKPLNGPTSTPLKSGSDSIQNSSSFGSQGKGKKRERGDQTSDSSKRERLTKTEDGDSGQFRLESMLKSEIAKITEKGGLVDFEGVERLVQLMQPDSSDKKIDLAGRIMLVDVIAVTDRYECLGWFVQLRGLPVLDEWLQEVHKGKIGDGSSAKENEKSVEEFLLALLRALDKLPVNLHALQTCNVGKSVNNLRSHRNSEIQKKARSLVDTWKKRVEAEMNMNDSKSTPSRGVSWPTKPAPSEVSHVGNRRTGGSVDTAAKSSTSQPMASKNSQVKLSTGEALSKSSSSPGSTKQMTTLVGSNSKDPNSKVVVGAGTSDVPLIPIKEEKSSSSSQSQNNSLSCSSEHARSSSAVSLSASKVPGGTSRSRKSSNGLHGSAASVVQKELSSGKNSSRNSPSERASPTQVSHEKLPDAPLPDHGNNQRLIVRLPNAGRSPARGSSGGSSEDAAISCGKASPPVDKHESHDRRAKAKTDALPTNVASNVTTDGCDANVALTGFEEGNGSPMDDELCRASEDGDKVAETSKPTSSLPGFVSRSGQTYDASLSSINALIESCAKISESSVSVSPGDDVGMNLLATVAAGEISRSENVSPMASPGRKSPVADESFSGNDGKSKRSGEAVACTPGQSDGGTAVEHMNHVDPLRFKNDLRHPVTPTSCDLAGDGEATSSSCTEKAVDVRTQMNSSPTDLLQNAEGPSLRTEVKEDASETLLSAKEPLVEPEGMHQFHEQRELGTHPGKGGSGSDSILKKRDSSFDENQKVECVDEVTMENNSTLISEAAGVSVKADKEANEKSPESSSDVGNENQINVENATGTVDAVQKPSPIAENCQSMEGTKEDAVLASASCGALIESKSINAESMKLGLVERRMDLDSSVSTNISECAEGNLDRKEVPGHCSGSSVHAESPRIPVQLSEVHKKSSGCNLDKVESEDAAERHASSANASLAAAGSDVAVKLDFDLNEGFPVDEVSQGENVRQEEPISSSAVCMPCPVPFPISSMSAGFHASITVASAAKGSFVLPENPLRSKGELGWKGSAATSAFRPAEPRKNAEPLSNTSDAPSVDNTSSKQGRAPLDFDLNVPDQRSFEDVASHASSRQNSSEAGPHDRGSAGLDLDLNRIDETPDAGPFSLSKFDIPSLPNKPSLSGGLSNGGNVSRDIDLNNGPGLDEVGIEAPARSQQIKSTLPFPSAVHGVRTNNAEFGNYSTWFPSGSSYSAITVPPLLPGRVEQSYVAGARAQRILGPPGSTSFAPDIYRGPVLSSSPAVAYPSAAPFQYPGFPFETNFPLSSNSFSASTAFMDSSSAGGLCFPTMPSQLVAPGGVISSAFPRPYVMNLPGGTSNVIPETRKWGSQSLDLNSGPGGTDSERRDDRLASGLRQLSVPNSQAPMEEQMKMFQVPGATNNPNGSRGRRLLKGKLGKLLLWEILDILWRMLDLLSHELDSNRLSLCG 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02252 1621 MobiDBLite consensus disorder prediction 906 933 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 502 651 - -
Bva03g02252 1621 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 1 1574 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 205 233 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 177 204 - -
Bva03g02252 1621 Gene3D - 11 246 IPR043151 -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 1202 1308 - -
Bva03g02252 1621 CDD TFIIS_I 316 392 - -
Bva03g02252 1621 Pfam BAH domain 29 138 IPR001025 GO:0003682
Bva03g02252 1621 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 296 403 IPR035441 -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 1224 1246 - -
Bva03g02252 1621 SMART BAH_4 28 143 IPR001025 GO:0003682
Bva03g02252 1621 MobiDBLite consensus disorder prediction 1262 1278 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 971 998 - -
Bva03g02252 1621 ProSiteProfiles TFIIS N-terminal domain profile. 308 394 IPR017923 -
Bva03g02252 1621 Pfam TFIIS helical bundle-like domain 342 391 IPR017923 -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 634 649 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 953 998 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 858 883 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 393 490 - -
Bva03g02252 1621 PANTHER BAH DOMAIN-CONTAINING PROTEIN 1 1574 - -
Bva03g02252 1621 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 259 395 IPR035441 -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 763 809 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 167 233 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 502 581 - -
Bva03g02252 1621 MobiDBLite consensus disorder prediction 423 486 - -
Bva03g02252 1621 ProSiteProfiles BAH domain profile. 28 143 IPR001025 GO:0003682
Bva03g02252 1621 SMART TFS2_5 314 393 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02252 Bva-Chr3 19623844 19630928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02252 257 389 Homeobox Transcription Factor Family AT4G02560 29.412 4.21e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bva03g02252 BAH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02252 - - gmx:112998769 2019.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02252 03 19623844 19630928 Bva03g02252 03 19623844 19630928 ECH
Bva03g02252 03 19623844 19630928 Bva04g00172 04 1071411 1079155 ECH