Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02246 ATGGCTAAGGATGCAGTGAGTGTTTCTATAAATGGTCAGTCTCAGGTCCCTCCAGGTTTTCGATTTCATCCCACGGAAGAAGAGCTTCTGCAGTACTACCTGAGGAAGAAAGTGGCTTATGAGAAGATTGACTTAGATGTGATTCGTGAAGTTGACCTCAACAAGCTTGAGCCATGGGATATTCAAGAGAAGTGCAAAATAGGGTCAACCCCTCAGAACGACTGGTATTTCTTCAGTCACAAGGACAAGAAGTATCCAACTGGAACCAGAACGAATAGGGCAACAGCAGCAGGATTCTGGAAGGCCACAGGTAGGGATAAGATCATCTACAGCGGGTTCAGAAGAATTGGGTTGAGGAAGACACTAGTCTTTTACATGGGACGAGCTCCCCATGGACAAAAATCTGACTGGATCATGCATGAGTATAGACTAGAAGACAACACTCGCGACCCAATTCAGGCTTCGGGTCCGGTAGGAGAGTCGTTGCATGAAGAAGGATGGGTGGTCTGTCGGGTgttcaagaaaaagaactaCCAGAAAACCATAGACAGTCCTAAGACCTCGTCCACCTCCATCTCCATGAATTCAGACACTCAAATACTAGGTTCAACAGGAACTGATCATAGGATTCTGGACCAGATTCTCTCTTTCATGGGAAGCACTAGCTGCAAGATGGAAAACGAGTCGTTTGGCAAATTGAACCCTATTGTCTCTGACGACGACGATACATACAGCAACAATAGATTTATCCATCTTCCCAGATTGGAAAGCCCTAGTATGAATAATGATTCATCAGCAGGATTGCATTTGGAGCATGAATCTagttttgttgatattttcacAGAAACTGAAGCTTGTGAAGATGATCATGAGGGATCCAAGACAAAGATGAATAACTGGGTTGCCCTTGACAGGCTAGTGGCTTCTCAGCTGAATGGCCAATTGCAACAAGAAGCCTACTCCAAGCAGCATCAGCAGCTATCGTGCTTCAGTTTCAGTCATGTTGCTAATGAAGATATTCAGGTACCAGCAGCAATCCATCACTCAAATTCTACCAGAACAATGATGAATCAGATCACCGACATCTACGGCAGCGACGACAACAATAACAGAAATAACGAGAGTGATCTTTGGAGCATCGCAAAGTCGTCTTCAGATCCATTGTGTCACATGCCAGTtctata 1184 0.4358 MAKDAVSVSINGQSQVPPGFRFHPTEEELLQYYLRKKVAYEKIDLDVIREVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYSGFRRIGLRKTLVFYMGRAPHGQKSDWIMHEYRLEDNTRDPIASGPVGESLHEEGWVVCRVFKKKNYQKTIDSPKTSSTSISMNSDTQILGSTGTDHRILDQILSFMGSTSCKMENESFGKLNPIVSDDDDTYSNNRFIHLPRLESPSMNNDSSAGLHLEHESSFVDIFTETEACEDDHEGSKTKMNNWVALDRLVASQLNGQLQQEAYSKQHQQLSCFSFSHVANEDIQVPAAIHHSNSTRTMMNQITDIYGSDDNNNRNNESDLWSIAKSSSDPLCHMPVL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02246 393 ProSiteProfiles NAC domain profile. 16 174 IPR003441 GO:0003677|GO:0006355
Bva03g02246 393 SUPERFAMILY NAC domain 12 174 IPR036093 GO:0003677|GO:0006355
Bva03g02246 393 Pfam No apical meristem (NAM) protein 17 144 IPR003441 GO:0003677|GO:0006355
Bva03g02246 393 Gene3D NAC domain 25 179 IPR036093 GO:0003677|GO:0006355
Bva03g02246 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 353 - -
Bva03g02246 393 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02246 Bva-Chr3 19580888 19583496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02246 1 344 NAC Transcription Factor Family AT2G46770 55.462 4.43e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva03g02246 NAM 7.4e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02246 - - palz:118040839 451.055