Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02237 ATGCTTCCTATAACCTGCTGCTGTCTCTTAATATGCCTTTTGAGCTCTTTCTCTCCTCCTGTCATAGCTGTCTTCAACCTCAGCTTACCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCAAAGGACAATTAATGCATCTCTGTCTAGGAGAGAGCTACTATCCGCCACCAATCATGACCAAGCTTCTTGTCTCACCGGAAACCCCGTCGACGATTGCTGGCGGTGCGACCCCAACTGGGGAGTTAACCGTCAGAGGCTTGCTGACTGCGGCATTGGGTTCGGCCGGGACGCCATGGGCGGGAAGGGCGGCCAGATCTATATCGTCAGCGATTCTTCCGATTTGGACCCAGCAAACCCCCGTCCTGGCACTCTCCGGCACGCCGTTATCCAAGACGAGCCTCTGTGGATCGTGTTCTCCACCGACATGACCATAAACCTCAAGCACGAGCTCATTTTCAACAGCTACAAAACCGTCGACGGCCGAGGCACGAACGTGCACATAACCGGACACGGCTGTATCACACTCCAATACGTGTCCAACATCATCATCCACAACGTCCATGTACACCACTGCAAGCCGTCGGGGAACACTAACATACGGTCGACTCCGACGCACGTAGGTTTCAGGGGGAAATCCGACGGCGACGGAATATCCATCTTCAGTTCAAGGAAAATCTGGATTGACCACTGCGCGCTGTCTTACTGCACGGACGGTCTGATAGATGCGATAATGGGGTCCACAGGGATTACGATATCGAGCAACCATTTCGCTCATCACAACGAGGTGATGCTGTTGGGTCACGACGATAGGTATTTGCCGGACGCGGGGATGCAGGTGACAATTGCGTTTAACCACTTCGGTGAGGGTCTGGTGCAGCGTATGCCTCGGTGCAGACACGGGTATATACACGTGGTCAATAATGATTTCACGCAGTGGCAGATGTATGCTATCGGCGGTAGCGCTAACCCCACCATAAACAGTCAGGGTAACCGCTACACTGCTCCTTCCGACCCCAATTCCAAAGAGgtGACGAAGCGCGTGGAGACAGACGAGAAGGAATGGGCTGGGTGGAATTGGAGGACAGAGGGGGATGTAATGGTAAATGGAGCATTCTTTGTCCCTTCAGGCGCTGAACTGAGCGAACAGTATGCCAGGGCGTCTAGCGTGGAACCTAAGTCCGCCGCTCAAATCGACCAGCTCACCATGTACTCCGGCGTCTTTGGCGATCCCAGgGATAACGGGGATCTATATCCCGGGTTCAACGGTGGTGGGACCGTGACCGGAGCCACCAGCACCACCGGCACGGGCGGGTCCACTGACGATGGGGACTTCTTCGGAATGATTTTCAGAGGTAGTAGCAGCGAAGCGGCTCCACCTCCCTCATCCATTCTTTCAacctttttgtctttcttaattattttaatttggtttctATCACCAACCAATTATCATTactatgattattatttatacaattg 1490 0.5168 MLPITCCCLLICLLSSFSPPVIAVFNLSLPHQHPYPEAVVHEVQRTINASLSRRELLSATNHDQASCLTGNPVDDCWRCDPNWGVNRQRLADCGIGFGRDAMGGKGGQIYIVSDSSDLDPANPRPGTLRHAVIQDEPLWIVFSTDMTINLKHELIFNSYKTVDGRGTNVHITGHGCITLQYVSNIIIHNVHVHHCKPSGNTNIRSTPTHVGFRGKSDGDGISIFSSRKIWIDHCALSYCTDGLIDAIMGSTGITISSNHFAHHNEVMLLGHDDRYLPDAGMQVTIAFNHFGEGLVQRMPRCRHGYIHVVNNDFTQWQMYAIGGSANPTINSQGNRYTAPSDPNSKEVTKRVETDEKEWAGWNWRTEGDVMVNGAFFVPSGAELSEQYARASSVEPKSAAQIDQLTMYSGVFGDPRDNGDLYPGFNGGGTVTGATSTTGTGGSTDDGDFFGMIFRGSSSEAAPPPSSILSTFLSFLIILIWFLSPTNYHYYDYYLYN 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Bva03g02237 496 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Bva03g02237 496 SMART amb_all 145 342 IPR002022 -
Bva03g02237 496 Pfam Pectate lyase 153 334 IPR002022 -
Bva03g02237 496 SUPERFAMILY Pectin lyase-like 58 387 IPR011050 -
Bva03g02237 496 Gene3D - 70 412 IPR012334 -
Bva03g02237 496 PANTHER PECTATE LYASE 11 432 - -
Bva03g02237 496 PANTHER PECTATE LYASE 18-RELATED 11 432 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02237 Bva-Chr3 19531626 19536178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02237 1 485 Polysaccharide Lyase AT3G53190 62.423 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02237 K01728 - gmx:100808438 776.933