Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02233 ATGGAAGTTCCAGAAGATTTCGCTCCGGGGTCGAAAGAGCAAACCCACAACGTCAAAGGGAAGAGAACCAAAAGGGTAAGACCACAATCCCCTATCCCCTTCTCCATCACCGCCAATTCCTCCAACCAAGGTAAAGATGATTCCATCAATGGCGATGACAATGATATCTATTACAATAACACTAGCTCCCCCACCACTTCCTCGACCAGAAACCGGGACAGCACAGAAGAAGAGCAGGACATGGACATAGCCAATTGTCTGATTCTTCTAGCTCAGGGCCAATCCCAGGAAGAAGATGGTGGATTGAATTATGCCAAGTATAGTAGTAGAAGATTCATGGAAGCTGCTTCAATGGGCTCCGGAAAAGCTGGgttttttgtttatgaatgCAAGACTTGTAACAAAACATTCCCTTCATTTCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAAGCCTAAGGCCTTGGCTGCTTTAATGGCCATTAATAATGATAAGAAGCAACTCTTGTTCTCACCAGAGGAAGATGAATTCCAATTCAAGAACAACAATGGCAGCGGCAacccattttctcttcaattgaACAGTAGAGGGAATTTGTGTAGCAATAACAATAAGCCCAAGGTTCATGAGTGTTCTGTTTGTGGTGCTGAATTTACATCTGGGCAAGCTTTGGGTGGTCATATGAGGCGACATCGAGCACCGGTTGGGACCAATACGACGTTGTCGTTGACCCCAATGCCTTCGGAACCAGAAGAAGAACAACCCAGAAAGCGAAGGAACATTTTGTCTTTGGATTTAGATCTCAACCTTCCAGCACCAGAAGATGATCAAACAGAATCCAAGTTTGCCTTTGGATCcaagcaacaacaacaacagaaacagcagcaacagcaacaCAAAGCAAATCTTGTCTTCTCTGCGCCGGCTTTGGTGGATTGTCAATACTG 950 0.4211 MEVPEDFAPGSKEQTHNVKGKRTKRVRPQSPIPFSITANSSNQGKDDSINGDDNDIYYNNTSSPTTSSTRNRDSTEEEQDMDIANCLILLAQGQSQEEDGGLNYAKYSSRRFMEAASMGSGKAGFFVYECKTCNKTFPSFQALGGHRASHKKPKALAALMAINNDKKQLLFSPEEDEFQFKNNNGSGNPFSLQLNSRGNLCSNNNKPKVHECSVCGAEFTSGQALGGHMRRHRAPVGTNTTLSLTPMPSEPEEEQPRKRRNILSLDLDLNLPAPEDDQTESKFAFGSKQQQQQKQQQQQHKANLVFSAPALVDCQY 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02233 316 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 11 316 - -
Bva03g02233 316 MobiDBLite consensus disorder prediction 283 300 - -
Bva03g02233 316 MobiDBLite consensus disorder prediction 30 70 - -
Bva03g02233 316 ProSitePatterns Zinc finger C2H2 type domain signature. 130 150 IPR013087 -
Bva03g02233 316 PANTHER ZINC FINGER PROTEIN ZAT5 11 316 - -
Bva03g02233 316 Gene3D Classic Zinc Finger 126 232 - -
Bva03g02233 316 MobiDBLite consensus disorder prediction 1 78 - -
Bva03g02233 316 SUPERFAMILY beta-beta-alpha zinc fingers 127 232 IPR036236 -
Bva03g02233 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 128 155 IPR013087 -
Bva03g02233 316 MobiDBLite consensus disorder prediction 270 300 - -
Bva03g02233 316 ProSitePatterns Zinc finger C2H2 type domain signature. 212 232 IPR013087 -
Bva03g02233 316 MobiDBLite consensus disorder prediction 226 258 - -
Bva03g02233 316 Pfam C2H2-type zinc finger 127 153 - -
Bva03g02233 316 Pfam C2H2-type zinc finger 209 235 - -
Bva03g02233 316 ProSiteProfiles Zinc finger C2H2 type domain profile. 210 232 IPR013087 -
Bva03g02233 316 SMART c2h2final6 128 150 IPR013087 -
Bva03g02233 316 SMART c2h2final6 210 232 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02233 Bva-Chr3 19492628 19494113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02233 5 316 C2H2 Transcription Factor Family AT5G04390 42.781 6.43e-80 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva03g02233 zf-C2H2_6 3.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02233 - - gmx:100799383 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02233 03 19492628 19494113 Bva09g00307 09 1600802 1602548 ECH
Bva04g02524 04 22782216 22783252 Bva03g02233 03 19492628 19494113 ECH
Bva13g02018 13 16131958 16132975 Bva03g02233 03 19492628 19494113 ECH
Bva09g00307 09 1600802 1602548 Bva03g02233 03 19492628 19494113 ECH
Bva07g02339 07 19124700 19125987 Bva03g02233 03 19492628 19494113 ECH
Bva03g02233 03 19492628 19494113 Bva03g02233 03 19492628 19494113 ECH