Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02229 ATGGGTCGGGAAACGTTGCTACTCCCACCGCCACCAACCCCAGCTGGAGCAGCGAACCCAGCACCAGTAGCGGCACTAGCAGCACCAGGAGCATCCCCAACATCACTCGCTCCTGGGTTTCGCTTTCACCCAACTGATGAGGAGTTGGTTATTTACTACCTCAAGCGCAAGGTCTATGGGAAAAGCTTCCGATTTGATGCTATTTCTGAGGTTGATGTTTACAAAAGCGAGCCTTGGGAACTTTCAGATAAGTCGAGATTGAAGACCAGGGACCAAGAATGGTACTTTTTTAGTGCATTGGACAAGAAATACGGAAATGGAGGAAGGATGAACAGGGCTACTGGCAAAGGATACTGGAAAGCAACAGGAAATGATCGCCCTGTTAAGCATGGAGAACGGACCGTAGGCTTGAAGAAAACTTTGGTATTTCATAGTGGTCGAGCTCCAGATGGTAAGCGCACCAACTGGGTTATGCATGAGTACAGGCTTGTTGATGAAGAACTGGAGAGAGCTAGGGTTGGATCCTCCCAGGAGAagaatgcatatgttttgtGTAGAGTGtttcacaaaaataacataGGACCACCGAATGGACAACGCTATGCACCTTTTATCGAGGAGGAATGGGATGATGCACCAGGCCTGATTCCAGGGGCAGATGCTGGGGATGAAGTTGCCATCACTGTCCAGAATACACGTGTTCAAGGCAATGGTCGTGTTGCGTGTGTTGAAGGGAATAATGTTATACAGGATACTCAATCCATCACCAAAACTCCTTTTGATGTTAATAAGCTTCCAATAGAAACGCAGAACCTCCTTGCCGTCTGCAAGAGGGAGAGTATGAATGAGTACCCTTTGCCGGAAAAGGATAATTCAAAGCATGGTGATGAGTACCCTTCACCACAAGCAGACAATCCAAAGCCTCTctctatttataaaagaagGCGGCACAATGGTTTGAATGCTAGTCATGCAAATGTTTCCGAGGATTCAACCCGAACAAGCTTGGATCCTTGCTCGTCCACGACAACCACCGCTGCCACACTGCCAGCTACAACCACCAGTactgcaaaaagaaaacattttctgtCTGCACTGGTGGAGTATTCTCTACTGGAATCAATTGAACCTAAGGAAAATCCTTCAGTTAATCCACCGGAATTCGATGCTGCCAACCTTGATTCATCCGTGCCTCCTAACTGCAAAAAGTTCATAGAGCACTTGCAGAGCGAGATTCACAAACTCTCTGTTGAAAGGGAGGCGCTCAAGTTTGAGACGATGAGTGCTCAATCCATGGTTAACATTCTTCAATCCCGAATCAACAATCTGACCGTAGAAAATGAGGATTTGAAGAGGAAGACCCAAGATCCTTA 1373 0.4508 MGRETLLLPPPPTPAGAANPAPVAALAAPGASPTSLAPGFRFHPTDEELVIYYLKRKVYGKSFRFDAISEVDVYKSEPWELSDKSRLKTRDQEWYFFSALDKKYGNGGRMNRATGKGYWKATGNDRPVKHGERTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERARVGSSQEKNAYVLCRVFHKNNIGPPNGQRYAPFIEEEWDDAPGLIPGADAGDEVAITVQNTRVQGNGRVACVEGNNVIQDTQSITKTPFDVNKLPIETQNLLAVCKRESMNEYPLPEKDNSKHGDEYPSPQADNPKPLSIYKRRRHNGLNASHANVSEDSTRTSLDPCSSTTTTAATLPATTTSTAKRKHFLSALVEYSLLESIEPKENPSVNPPEFDAANLDSSVPPNCKKFIEHLQSEIHKLSVEREALKFETMSAQSMVNILQSRINNLTVENEDLKRKTQDP 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02229 457 Coils Coil 433 453 - -
Bva03g02229 457 MobiDBLite consensus disorder prediction 284 309 - -
Bva03g02229 457 Coils Coil 405 425 - -
Bva03g02229 457 Gene3D NAC domain 45 193 IPR036093 GO:0003677|GO:0006355
Bva03g02229 457 MobiDBLite consensus disorder prediction 1 20 - -
Bva03g02229 457 PANTHER NAC DOMAIN-CONTAINING PROTEIN-RELATED 26 453 - -
Bva03g02229 457 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 26 453 - -
Bva03g02229 457 MobiDBLite consensus disorder prediction 322 345 - -
Bva03g02229 457 ProSiteProfiles NAC domain profile. 36 190 IPR003441 GO:0003677|GO:0006355
Bva03g02229 457 Pfam No apical meristem (NAM) protein 38 163 IPR003441 GO:0003677|GO:0006355
Bva03g02229 457 SUPERFAMILY NAC domain 32 191 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02229 Bva-Chr3 19475096 19480552 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02229 1 453 NAC Transcription Factor Family AT3G10480 42.779 1.02e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva03g02229 NAM 1.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02229 - - gmx:100808783 645.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02229 03 19475096 19480552 Bva03g02229 03 19475096 19480552 ECH