Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02220 ATGACTGATTTTCAGCCGCTACAACAGAAGCCTGAGCCCAGTGATGCCCATGCCGAGTTTGAGCGTGGACTGGAGGAGTTTATGCGTGggcagttggatgattgtatGTCATTTGCTTCGTGTAGCTCCACTCGCACTCCAGATGATGAGGATGACGAGGGTGATCAGCTAGTTCGGAGGAGAAGAAGGTCTGATCTTGAAGGGGATGATTTAGCAGAGTCGTCAGCTGCTCGGAGGCGTCACTCGAGGATTTTGAGCAGATGGGCGGCTCGGCAGGCACAAGAGATGATTACTACCATTGAGAGGAGGAACAGGGAATCTGAATTGATGGCACTTGCTGGGTTACACACAGTCTCTATGCTGGACTCCTCTTTTTTGAGGGGATCACAGTCTCCAACTTCAGGTCGTGAGGGGGCAGCAGAGAGACCAAGCACTCAGGCATCTGCCATTTTGCAGATGTGGCGTGAATTGGAGGATGAGCATTTATTGAGTCGGGCACGTGAAAGAATGAGGGAAAGGTTGCGGCGGCGAAGGAATGCTGATTCTAATACTAATATCTCAAGTACTGTCTCAGTGAGTCGAGGCAGTGAGCATCTGGGGAGTTTGGGGGATGCAACTGAAAGTGAAAATGATTATGGGACTTGGTCACATGAGCAGGTTGGGTCACAGAATGAACATGGAGATCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAagttgaaagagagagagtgagacaGATTGTTCGGGGATGGATGGAAAGTGGGATTAGTGATCATTCAGCTAATGTGAATCAGAGAAACAACAATCGCAGGGCAGAATGGCTTGGTGAAACTGAGCGTGAAAGGGTAAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAGCAGAGAGGTTCACGTGGAAGCCGGCGAGATGCTCAAGCCACTGAAATTGGTGCTCAAGTTGATCGGGCCCGTGAAGGATTGTTAACTGATCATGATGAGGGCCAGCCAGAGCATGTTCGAAGGGATGTGTTAAGGTTGCGTGGAAGACAAGCCCTAGTTGATTTGCTTATGAGGGTAGAAAGGGAAAGACAAAGAGAGCTTCAGGGTCTTTTGGAGCATCGTGCTGTCTCTGATTTTGCTCATCGTAACCGTATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTGTTGAAGATGAGAGGCCACCTTCAATGGCAGCAAATGAACTAAGCCAGTTGAGGCAGCGACACACAGTCTCTGGTTTAAGGGAAGGGTTTCGCGAAAGATTAGAAACTATTGTTCGTGGTCAAGCAGGCAGCAATTCTGATGCCACATCTGACAGTAGCATCAGTGAAACAAGATCAAGAACTGACCAGaaccaaacaaacaattttatagaTGCCCAACAGGAAAGTTATGAACAGGAGCAGATCAGGAGCCTGGAATCTGATGTGCGTGAGTTACCTGATCAAACAGGAATACAGGAAAGTCAGACCAGCGAAACTGTAACTTGGCAAGAAACTGCTACAGAGGGAGGGAATTGGCAGGAACAAATTACAGAAGATGTAGGAGGAAACTGGCAGGGGAGACCTTATGGCCCATTCAATCAGTTGAGAGATGAAAGGGCAGTTAATGATTGGCACGGGGAAATTCCTAGAAATGTAGAAGTGGAAGATGCTCATCCACGAGAAGCTCGGGATTGGCAAGAGGATAACTCAAGGGAAACTGCCAGTAATAATTGGTCAGAAGGACCCTCTGGTCCACCAAGGAATCGTCGTGGTGTTCCTTTTAGAAGATTCAATAGATTTCACCCACCCGATGATGATAATGTGTACAGCATGGAGCTTAGAGAACTTTTAAGCAGGAGAAGTGTTTCTAATCTTCTTCGCAGTGGTTTCCGTGAAAGCCTGGACCATTTAATTCAGTCTTACGTGGACAGGCAAGGTCGTGCACCAATTGACTGGGATTTGCACAGAAACTTGCCAACATCAACTCCTGCTTCGGCTGATGGGGAGACTGATCAGCAGAGAGGTGAACACAATGAGGGTCAACGTGATGCCATTAACAGACCTTCGTTGGTGTTACCATCTCCACCAGTACCTCCACCACAACCTCTCTGGCACCAGGACTTGCATCAGACTGGCTGGTCTCGCCATAGTATGCATCGATCTGAAATTGAATGGGAGATAATCAATGATTTAAGAGCAGATATGACAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCCTGTATGGATATGCAACTGGAGTTGCAGCGTTCCGTCAGACAAGAAGTCTCTGCTGCTCTGAATCGCTCAGCCGGTGAAAATGGGTTGGGTGCCGAGACATCAGAGTATGGGTCTAAATGGGGGCACGTCAAAAAAGGAACTTGCTGTGTTTGTTGCGATAACCATATTGATTCGCTCTTGTACAGATGTGGGCACATGTGCACTTGTTCAAAGTGTGCCAATGAGTTAGTCCGCGGTGGAGGTAAGTGTCCTTTATGCCGAGCACCGATTGTGGAGGTGATCCGAGCATATTCCATACTgta 2570 0.4681 MTDFQPLQQKPEPSDAHAEFERGLEEFMRGQLDDCMSFASCSSTRTPDDEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQSPTSGREGAAERPSTQASAILQMWRELEDEHLLSRARERMRERLRRRRNADSNTNISSTVSVSRGSEHLGSLGDATESENDYGTWSHEQVGSQNEHGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSANVNQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDAQATEIGAQVDRAREGLLTDHDEGQPEHVRRDVLRLRGRQALVDLLMRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTVEDERPPSMAANELSQLRQRHTVSGLREGFRERLETIVRGQAGSNSDATSDSSISETRSRTDQNQTNNFIDAQQESYEQEQIRSLESDVRELPDQTGIQESQTSETVTWQETATEGGNWQEQITEDVGGNWQGRPYGPFNQLRDERAVNDWHGEIPRNVEVEDAHPREARDWQEDNSRETASNNWSEGPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVDRQGRAPIDWDLHRNLPTSTPASADGETDQQRGEHNEGQRDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRADMTRLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGENGLGAETSEYGSKWGHVKKGTCCVCCDNHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02220 856 MobiDBLite consensus disorder prediction 52 78 - -
Bva03g02220 856 ProSiteProfiles Zinc finger RING-type profile. 804 843 IPR001841 -
Bva03g02220 856 Coils Coil 733 753 - -
Bva03g02220 856 CDD mRING-HC-C3HC5_NEU1 803 843 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 437 465 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 207 221 - -
Bva03g02220 856 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 1 856 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 181 196 - -
Bva03g02220 856 SUPERFAMILY RING/U-box 797 849 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 39 78 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 174 244 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 557 610 - -
Bva03g02220 856 Pfam Zinc finger, C3HC4 type (RING finger) 801 848 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 435 465 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 557 575 - -
Bva03g02220 856 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 788 854 IPR013083 -
Bva03g02220 856 MobiDBLite consensus disorder prediction 1 22 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 658 686 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 222 244 - -
Bva03g02220 856 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 856 - -
Bva03g02220 856 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02220 Bva-Chr3 19416828 19422473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02220 804 850 C3H Transcription Factor Family AT3G06140 42.553 1.10e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02220 - - gmx:100784174 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02220 03 19416828 19422473 Bva09g00315 09 1637799 1642400 ECH
Bva03g02220 03 19416828 19422473 Bva03g02220 03 19416828 19422473 ECH