Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02210 ATGTGCTTCCCTTTGGCGGCTCCAAACACGTTTCCTGGGCAACATTCTCATACACATTCAGCTCCACCTAACGGTTCGCATCTCCGGCCAGTCACAGGCCACTGGTTTCGTTTTTCCTCGGGAGACCTGTTGAGTTTCTTGGGCTTTCTGGAAGCTTGCAAGATGGGTGATAAACAAGAGAATGACACTCTTGTGAAGGTCAAGCCTTCGAGTGAACAGGATATTTCTGATGAACTAGATCAGAGAATAAAGAAGTACCTCAGAGGAGAAGGTGCTAATTTGGAGAATCTTCAAGATAGAAAGCTGAAGGGTCAACTTGCTGTTCGGGAAGACTTATATGGAAAGTCTGCAAAGGCTGCTGCCAAGGCTGAGAAGTGGCTTATGCCCAGTGAGGCAGGTTATTTGGAGGCCGATGGTATAGAGAAGACATGGAGGATCAAACAAACAGATCTAGTTCGTGCGGTAGATATCTCAAGCTCAAGGAACCAATATGACATTGTTTTACCAGAACTTGGTCCATACATTCTGGATTTTACATTGAGTGGCCGGTATATGGTTATTGGAGGACGCAAGGGCCATCTAGGAATTGTGGACATGATGAAATTGAGCCTAATCAAAGAGTTTCAGGTTAGAGAAACAGTGCGAGATGTAGTATTCTTGCACAATGAGTTGTTTTTTGCAGCTGCCCAGAAAAAGtatccttatatatataaccgtGATGGCACAGAACTTCATTGCCTTAAGGAACATGGTGCAGTGTTGAGGCTTCAGTTTCTGAAAAATCACTTTCTTTTGgcttctataaataaatttgggcAGCTTCATTATCAGGATGTTACAACGGGTGTTATGGCTGGTAATTTTCGTACTGGAATGGGAAGGACTAATGTGATGCAAGTGAACCCTTTCAACGGAGTTGTTGCTTTGGGTCACTCGAGTGGTACAGTAACAATGTGGAAGCCTACCAGCTCTGCTCCACTTATCAAGATGCTCTGTCATCATGGGCCTGTCTCAGCACTGGCATTTCACTCAAATGGTCACTTAATGGCCACTGCAgggaaagacaaaaaaattaagctttgGGACTTGAGAAAATTCGAGGTTCTTCAGACGGTACCTGGCCACGCAAACACACTGGATTTTAGTCAGAAAGGTTTGCTTGCTTGTGGTACTGGATCATTTATCCAGGTTCTTAATGATTCTTCTGGTACTCTCAACTATTCTAGGTATATGAATCATTCCATGGCAAAGGGTTACCAGGTAGGAAAGTTATTATTTCGACCATACGAAGATGTTCTCGGTATAGGACACTCCATGGGATGGTCTAGTATTCTTATTCCTGGATCAGGTGAACCTAACTTTGATTCATGGGTGGCAAACCCATTTGAAACATCTAAACAGAGGAGAGAAAAGGAAGTTCACTCTCTTCTTGATAAGCTTCCACCAGAAACAATCATGCTGGATCCCAGCAAGATTGGTACACTGAAACCAACAAAGAACGAACAACGATCAAAGCAAGAGAGGGAGGCTGAGATGGAGGAAGCTATTGAAGCAGCCAAGGGCATCAagctgaagaagaagacaaaaggaagaaataagGCAAGTAAGAGGATGCAGAAAAAGCAAGAGATGATTGAAAAAGTGAGGAGACCTTACTTGGAGCAAAAAACGAAGGAGGAAGAACAATTTTCCAGGAAGAAGCAGAAAGTTAGTGAGGAGATTGAATTGCCAAAATCTTTGCAGCGATTTGCTAGTAAGAAAGGTGCATCGTG 1772 0.4142 MCFPLAAPNTFPGQHSHTHSAPPNGSHLRPVTGHWFRFSSGDLLSFLGFLEACKMGDKQENDTLVKVKPSSEQDISDELDQRIKKYLRGEGANLENLQDRKLKGQLAVREDLYGKSAKAAAKAEKWLMPSEAGYLEADGIEKTWRIKQTDLVRAVDISSSRNQYDIVLPELGPYILDFTLSGRYMVIGGRKGHLGIVDMMKLSLIKEFQVRETVRDVVFLHNELFFAAAQKKYPYIYNRDGTELHCLKEHGAVLRLQFLKNHFLLASINKFGQLHYQDVTTGVMAGNFRTGMGRTNVMQVNPFNGVVALGHSSGTVTMWKPTSSAPLIKMLCHHGPVSALAFHSNGHLMATAGKDKKIKLWDLRKFEVLQTVPGHANTLDFSQKGLLACGTGSFIQVLNDSSGTLNYSRYMNHSMAKGYQVGKLLFRPYEDVLGIGHSMGWSSILIPGSGEPNFDSWVANPFETSKQRREKEVHSLLDKLPPETIMLDPSKIGTLKPTKNEQRSKQEREAEMEEAIEAAKGIKLKKKTKGRNKASKRMQKKQEMIEKVRRPYLEQKTKEEEQFSRKKQKVSEEIELPKSLQRFASKKGAS 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02210 590 Pfam BING4CT (NUC141) domain 410 488 IPR012952 -
Bva03g02210 590 MobiDBLite consensus disorder prediction 537 572 - -
Bva03g02210 590 Gene3D - 172 438 IPR015943 GO:0005515
Bva03g02210 590 SUPERFAMILY WD40 repeat-like 172 436 IPR036322 GO:0005515
Bva03g02210 590 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 364 - -
Bva03g02210 590 SMART WD40_4 201 238 IPR001680 GO:0005515
Bva03g02210 590 SMART WD40_4 281 320 IPR001680 GO:0005515
Bva03g02210 590 SMART WD40_4 365 399 IPR001680 GO:0005515
Bva03g02210 590 SMART WD40_4 323 362 IPR001680 GO:0005515
Bva03g02210 590 Coils Coil 553 573 - -
Bva03g02210 590 MobiDBLite consensus disorder prediction 489 510 - -
Bva03g02210 590 Pfam WD domain, G-beta repeat 331 362 IPR001680 GO:0005515
Bva03g02210 590 MobiDBLite consensus disorder prediction 11 25 - -
Bva03g02210 590 MobiDBLite consensus disorder prediction 1 26 - -
Bva03g02210 590 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Bva03g02210 590 SMART BING4CT_2 409 489 IPR012952 -
Bva03g02210 590 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 371 IPR001680 GO:0005515
Bva03g02210 590 MobiDBLite consensus disorder prediction 525 572 - -
Bva03g02210 590 PANTHER BNAANNG36350D PROTEIN 64 586 - -
Bva03g02210 590 PANTHER WD-REPEAT PROTEIN BING4 64 586 IPR040315 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02210 222 402 U-box Gene Family AT1G04510 26.425 2.97e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02210 K14768 - gmx:100786818 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02210 03 19350633 19355747 Bva03g02210 03 19350633 19355747 ECH