Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02196 ATGGCGGCGCCGAAACCTCGCAGTGGTCGATCAACGTCTCTGAGGGATGCCTCTGAGTCTGCCAAGATGGAGGGCACCGGTAGCTGGAACGCCCTCGAATGGACCAAAATAGAGCCTATTTCTCGTTATGTCTCGcaatcaaattttgaattcttgcTTGAGGAAGAGCAAGTCATGGCCGAAGGACATGGTGTTGTTCTTGTCAATACAGATGATGCGGGTACATTGATAGTTACAAATTTTCGTCTTATTTTTCTGAGTGAGGGAACTAGAAATATTATTGCCCTTGGAACAATACCGCTGGCAACAATTGAGAAGTTTAACAAGATTGTTGTGAAGATTCAGTCAAATACTCGTCAATTGGACAAGACACCACCAAGAAGACTGCTCCAGGTCATTGGAAAAGATATGAGGATTATTGTCTTTGGTTTCAGGCCTCGTACAAAACAGAGACGTTTGATATTTGATGCATTACTGAGGTGTACGAAGCCAGCAAGGATATGGGATCTGTATGCTTTTGTATCTGGACCTTCTAAGTTTGGTAACACTAATCCGAAGGTGCGGTTACTGGGTGAGTATTTTCGGCTGCTTGGAAAAGGCTCTTATCATGCATCAATGAGTATGATTGAAAGTGGGTCCTTTAGCTTGTCCAATGACTTGTGGAGAATAAGTAGTGTAAATTCCAACTATACAATGTGCCAAAGTTATCCTTTTGCTTTGATAGTTCCAAAGGGCATCAGTGATGATGAAGTACTCCAAGCTTCCAGCTTTCGGGCAAGAGGCCGGCTGCCTGTAGTTTCTTGGTGCCATCCTGGTACTGGAGCAGTTCTTGCACGTTCATCACAACCCTTAGTTGGCCTCATGATGAATGTGAGGAGCAACACAGATGAAAAGCTTGTGGCTGCACTCTGTGGCAAACTTGGTGATGGCTCCCGGAGGAAATTATACATTGCTGATGCAAGACCAAGGAAAAATGCATTAGCTAATGGGGCCATGGGAGGCGGTTCAGAATCATCATCAAATTACTTCCAATCTGAGATAGTTTTCTTTGGGATAGACAACATCCATGCAATGAGAGATAGCTTTGCTCGGCTCAGAGAATACTTAGATACTCATGGCAGAACATCATCTGACGGAATGTCATCATTTTTGAGACATGGTGGGTGGACATGGGGTGGAGGCAATCTGAGTAGTATGTCTACTTCAGTGTCAACCCTTGGGGACAGTGGATGGTTGCTACACGTTCATAGTATCTTGGCTGGTTCAGCCTGGATTGCTGCTCGTGTTGCTATGGAAAAGGCTTCCGTGCTTGTACATTGCAGCGATGGATGGGATAGAACAACTCAGTTGGTTTCACTTGCCAATTTATTGCTTGACCCATACTATCGCACAATTGCAGGGTTTCAGGCACTTGTTGAAAAGGACTGGCTAGCATTTGGTCATCCATTTTCAGATCGTGTGGGAATGCCCTTTGTTTCTGCAAGTGGCAGCATGCCATATGAGTTACCTAGGCAGTCCTCCAGTGGAAGTTTCCCATCGTCCCCCATGCGCCAATCATCAGGAACTTTCACACCTCAACCTCCTACTTCTTCTCATGGACAGAATTCAAACAATTACTCTCCTATTTTTTTGCAGTGGGTTGATTGTGTTTCACAATTGTTACGGATGTATCCTTCTGCTTTTGAGTTCTCCTCGGCTTTCCTGGTGGACTTCTTAGACTGTGTGCTTTCTTGTCGTTTTGGAAACTTCTTGTTTAATAgtGAGAAGGAGAGGCAGCAGTGCAATGTTTTTGAAGCTTGTGGATGTATGTGGGCATACTTGGCTGATTTGCGTGCTTCAGAAGGAGTTTCTCATGTGCATTATAATGTCTTTTATGAACCTTTGAAGTACAATGGTCCTCTTCTGCCGCCTGCTGCAGCTTTAGCTCCAACTTTGTGGCCGCAATTCCATCTTCGTTGGGCATGCCCAGAAGAAGCTCAGGCTGGGGAGATTGAAGCACATTGTAGGAAGATGGCTTTGAAAAACTGTGAGATGCAGAAGGCTAAAGAAGTGGCTGAAAGGAGTGCTAAAGAAATTACAGTTGCCATGGAATCATTGACTGCAGAATTACGAAATGAGAAGCAGCTGAGCAGCTCAGCTATGAACATGGTCAAGAGGACAAACAAGGAAAATGTGGCCATAAAGCGAGCAATTCAATCACTAGGGTGCAAGGTTCTTTTTTCTGGCAGTGGTGATTGTGTAGTTGAAATCGAAAGCAATCCAGTGGGACCTTTACAGAACCTTAGGTATTCTTCCTCCAGAAAAGATTCAGATGGTTCTGAGCATGATGAGAAAGGTGATCTGTCTGATTCTGTGATTATTATGGAAGATGATGAATCAGATAATGTCATTGGTCGAGTTTGTGAAACTCTATGCCCATTTCGTGCCAAAGATGGAGGCTGCCGGTGGCCTAATGCAAGTTGTGCTCAATTGCGTAGCCAGTTTGTGAGTCTCAAGGCAAATTTTGATGCCATTGACCAGCTTTCAATTGATGATAGTTATTTCAAGTCTGAGTA 2555 0.4399 MAAPKPRSGRSTSLRDASESAKMEGTGSWNALEWTKIEPISRYVSQSNFEFLLEEEQVMAEGHGVVLVNTDDAGTLIVTNFRLIFLSEGTRNIIALGTIPLATIEKFNKIVVKIQSNTRQLDKTPPRRLLQVIGKDMRIIVFGFRPRTKQRRLIFDALLRCTKPARIWDLYAFVSGPSKFGNTNPKVRLLGEYFRLLGKGSYHASMSMIESGSFSLSNDLWRISSVNSNYTMCQSYPFALIVPKGISDDEVLQASSFRARGRLPVVSWCHPGTGAVLARSSQPLVGLMMNVRSNTDEKLVAALCGKLGDGSRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRDSFARLREYLDTHGRTSSDGMSSFLRHGGWTWGGGNLSSMSTSVSTLGDSGWLLHVHSILAGSAWIAARVAMEKASVLVHCSDGWDRTTQLVSLANLLLDPYYRTIAGFQALVEKDWLAFGHPFSDRVGMPFVSASGSMPYELPRQSSSGSFPSSPMRQSSGTFTPQPPTSSHGQNSNNYSPIFLQWVDCVSQLLRMYPSAFEFSSAFLVDFLDCVLSCRFGNFLFNSEKERQQCNVFEACGCMWAYLADLRASEGVSHVHYNVFYEPLKYNGPLLPPAAALAPTLWPQFHLRWACPEEAQAGEIEAHCRKMALKNCEMQKAKEVAERSAKEITVAMESLTAELRNEKQLSSSAMNMVKRTNKENVAIKRAIQSLGCKVLFSGSGDCVVEIESNPVGPLQNLRYSSSRKDSDGSEHDEKGDLSDSVIIMEDDESDNVIGRVCETLCPFRAKDGGCRWPNASCAQLRSQFVSLKANFDAIDQLSIDDSYFKSE 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02196 851 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 214 654 IPR029021 -
Bva03g02196 851 PANTHER MYOTUBULARIN-RELATED 20 850 IPR030564 -
Bva03g02196 851 SMART gram2001c 43 111 IPR004182 -
Bva03g02196 851 MobiDBLite consensus disorder prediction 767 783 - -
Bva03g02196 851 Pfam Myotubularin-like phosphatase domain 212 592 IPR010569 -
Bva03g02196 851 ProSitePatterns Tyrosine specific protein phosphatases active site. 438 448 IPR016130 GO:0016311|GO:0016791
Bva03g02196 851 ProSiteProfiles Myotubularin phosphatase domain. 198 650 IPR010569 -
Bva03g02196 851 Coils Coil 682 709 - -
Bva03g02196 851 MobiDBLite consensus disorder prediction 759 783 - -
Bva03g02196 851 CDD PTP-MTM-like 261 552 - -
Bva03g02196 851 SUPERFAMILY PH domain-like 52 174 - -
Bva03g02196 851 Gene3D - 63 162 IPR011993 -
Bva03g02196 851 MobiDBLite consensus disorder prediction 1 22 - -
Bva03g02196 851 PANTHER PHOSPHATIDYLINOSITOL-3-PHOSPHATASE MYOTUBULARIN-1 20 850 - -
Bva03g02196 851 MobiDBLite consensus disorder prediction 500 534 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02196 Bva-Chr3 19252481 19263762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02196 1 849 Protein tyrosine phosphatase (PTP) family AT3G10550 69.438 0.0 1187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02196 K18081 - gmx:100781842 1357.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02196 03 19252481 19263762 Bva03g02196 03 19252481 19263762 ECH