Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02188 ATGGTAAAGCAAAGGGTTGAACAACATATTATGTcagaaggaaagaagaaaaagaagaagaaagaagtttCTATACCCCGGCCTGCATGCTCATGGGTGTAttttagCAAGGAGTTTATTAAAGAGTATATTGCTTCCCATCCTGAGTCCTCTGGCCTTAAAGCTGCAACAAAGGCTGCATCTGATGCTTGGAAGTCAATGAGCCttgaagagaaggaaaaatacaCTAGGCGTGCTCGTGAAGTGTGGGATGGCTACATGAGTACAAATCTTGCTCGTAGCCCCAAACCAAGGAAACAGACTAAACTTGTCACAAGATGCTCTCCCGGTCGCTTGTTCAATGTGTTACAGCACCTTACATCTGAACAGCAGGATGCAGTTAAGAGTATGGGATTTGGCAGCCTTCTTGGCCTTAGATGCCGTACACTTCGTCGTAGTTTGTGCCTTTGGCTATTGGAGAGGTTTAACACCACAAATTGCAGCTTGGAAATCTGTAGCAAGCATATCTCTTTAACTCCAAAAGATGTAGAGCAAGTAATGGGGTTATCTGCTTGTGGAAAGGATGTGGTGAACTCTGGGCCAGATGACTTGATTTCAGACTTACGTAACAGATACAATGCTACAAATCATGGAATTTCCGTGCGATTTTTAGAGGATCGATTGGCAGCTCTTGAAGCTGGTGAAGATTTTAAGAGATCCTTTGTCCTCTATGCACTGGGCACACTTCTGTCCCCAACAGCTAGGCTGGATGTTAGTCCTTCCTTCCTCcactttttaacaaatatggATCTCGTCCATCAGTACAACTGGGGTAAATTCTTGCTTGATAGACTAGTTCGAGAGGTATCACGCTTCCGTCAAGGGAAGCAACAAGCTGTTGGTGGTTGTCTTCTGTTTCTACAGctTTTCTACTATGAGAGCATCTCCCTCGAGGGGTCTTCTGCTCGAGGACCCTCCAGTGTTCCATGCCTGTTTTACTGGGGAGGGGAGGAGATTACTGAAAGAGAAAAACGAGAAAAAGCACTTGGTGGCTATGGTTTTGGCGAGGTAATATGCAAGGAGAAATGCCATAGTATGGAGCTTTCAGATTACAGAGATCAACTGGATGCTCTACCAATCGGTACAATAAGAACTAGGATTGGGCATTGTGCTGTGCTAGAACGGAAACTCAATGAGGAAGACATTCCAGTTCTTGTCGAGACTCAATCTGTGGTGTGTGGAGATGTGGATGTAGTGGTTGAATCTGTCAAAGTCCCATGCCGAAACAGAGAATATGGTTGCAATGACGCTCTCAATTTAGATATCTGTATATGGAATTCTAGGGAACATAATGCAGATTGgtcttg 1346 0.4205 MVKQRVEQHIMSEGKKKKKKKEVSIPRPACSWVYFSKEFIKEYIASHPESSGLKAATKAASDAWKSMSLEEKEKYTRRAREVWDGYMSTNLARSPKPRKQTKLVTRCSPGRLFNVLQHLTSEQQDAVKSMGFGSLLGLRCRTLRRSLCLWLLERFNTTNCSLEICSKHISLTPKDVEQVMGLSACGKDVVNSGPDDLISDLRNRYNATNHGISVRFLEDRLAALEAGEDFKRSFVLYALGTLLSPTARLDVSPSFLHFLTNMDLVHQYNWGKFLLDRLVREVSRFRQGKQQAVGGCLLFLQLFYYESISLEGSSARGPSSVPCLFYWGGEEITEREKREKALGGYGFGEVICKEKCHSMELSDYRDQLDALPIGTIRTRIGHCAVLERKLNEEDIPVLVETQSVVCGDVDVVVESVKVPCRNREYGCNDALNLDICIWNSREHNADWS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02188 448 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 25 81 IPR009071 -
Bva03g02188 448 SUPERFAMILY HMG-box 11 87 IPR036910 -
Bva03g02188 448 MobiDBLite consensus disorder prediction 1 19 - -
Bva03g02188 448 SMART hmgende2 24 95 IPR009071 -
Bva03g02188 448 CDD HMG-box 25 87 - -
Bva03g02188 448 Pfam Plant mobile domain 170 309 IPR019557 -
Bva03g02188 448 Pfam HMG (high mobility group) box 25 89 IPR009071 -
Bva03g02188 448 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 1 431 IPR044286 -
Bva03g02188 448 MobiDBLite consensus disorder prediction 1 22 - -
Bva03g02188 448 Gene3D High mobility group box domain 10 90 IPR036910 -
Bva03g02188 448 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 2 1 431 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Bva03g02188 HMG_box 8.1e-10 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02188 - - zju:107416263 617.846