Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02177 ATGATATCTTCAGGGGTAAACTTGGTGATGACTGTCATTGGTTTCGTGGTGAGCACCATGTTCATCGTTTTCGTTTGCACCAGACTCATTTGTGCTCGAATTCACTTGAATGCTTCCCGCAGATCCTTCCCTGTTATTGCTTCCAGATCTGATCTCAATATGCTGGAACGGGGATTTCATGGTCTTGAGCCCGTAGCCGTAGCAAACTTTCCAACAAAGAAGTACAGTGACGAATTCTTTTCTGGCACAGAGAATTCTCAATGCACAGTCTGCCTCTCAGAATACCACGATGAAGATATATTGCGTATCCTCCCCAATTGTGGGCACTCCTTCCATGTGACCTGCATAGACATATGGCTCCACCAGCATTCTACTTGTCCTGTTTGTCGAATATCATTGCGCGTATTCCCCGAGCGAAAACGCTTTATGCAACCCTTGTTCAGCTCTGCTATTCGATCTCAGTATAGCATGGAATCCTTTGGCACTAACTGTATGGTGACTAACAATAGTTTGTCATCAACGACCCATGACAGCCATGGGATTAACCCTGTACAGGAGGATCATTTTGCATCTGAGGGTGGTGGAGCGGTTGCTGTGGAGAATGCCACCCATTTAAGTCACTGTGATCAGATCATTAAAGATGCAGGAAACAAACATGTAGAGAGCCCATCAAATCTTGGAATTTA 686 0.4504 MISSGVNLVMTVIGFVVSTMFIVFVCTRLICARIHLNASRRSFPVIASRSDLNMLERGFHGLEPVAVANFPTKKYSDEFFSGTENSQCTVCLSEYHDEDILRILPNCGHSFHVTCIDIWLHQHSTCPVCRISLRVFPERKRFMQPLFSSAIRSQYSMESFGTNCMVTNNSLSSTTHDSHGINPVQEDHFASEGGGAVAVENATHLSHCDQIIKDAGNKHVESPSNLGI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02177 228 PANTHER OS11G0150450 PROTEIN 1 225 - -
Bva03g02177 228 SMART ring_2 88 129 IPR001841 -
Bva03g02177 228 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Bva03g02177 228 CDD mRING-H2-C3H2C2D_ZSWM2 87 130 - -
Bva03g02177 228 PANTHER OS11G0150450 PROTEIN 1 225 - -
Bva03g02177 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 135 IPR013083 -
Bva03g02177 228 Pfam Ring finger domain 87 130 IPR001841 -
Bva03g02177 228 SUPERFAMILY RING/U-box 82 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02177 Bva-Chr3 19149363 19152354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02177 8 145 C3H Transcription Factor Family AT2G34990 32.394 5.75e-21 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02177 - - gmx:100786109 340.887