Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02147 ATGGACATAACCCCCACAGCAATCACCACAGCTGCCGCCACCGCCACCGCCGCTACTGCTACTGCTACTACTGGTGCAAAATCCCCAGAACCTGAAAGTGAGACTCCGACCCGGATCCAACCTGCTAAGAGCTTGTCTTTCTCCAACGGCGTGCTTAAGCGGCATCAcccccacccccacccccATCACCATCTCCACCACCCCCTCGCCAACCAATCCGTGGTGGTTACCTACAAAGAATGCTTGAAAAACCATGCAGCCAGCTTGGGAGGCCATGCTTTGGATGGTTGCGGCGAGTTCATGCCTTCCCCCAACGCCACCTCAACCGACCCGACTTCTCTCAAATGCGCCGCTTGTGGGTGTCACCGGAATTTCCACCGCCGTGAGCCGGAGGAGCCAATTCCCACCCCGACCACCCACGTTATCGAGTACCAACCTCACCATCGACACCACCCTCCACCACCGCCAGCACATCGAAGCCCCAATTCCGCTTCCCCACCACCGATCTCCTCGTCTTACTACCCGGCATCAGCACCCCACATGCTCCTAGCTCTCTCCGCCGGCATATCAGTTCCCCCAGAGAGCACCGCTGCACCCAGCAACCACGCTCTTGTCTCGCCGGGCACGAATGCGAGAAAGCGGTTCCGGACCAAATTCACCCAAGATCAGAAAGACAAGATGCTCCAATTCGCCGAACGGGTAGGGTGGAAGATGCAGAAGAAGGATGAGAATTTGATACACGAGTTCTGCAATGAGATTGGCGTTGACAGAGGGGTTCTAAAGGTGTGGATGCACAACAACAAGAACACTTTCGGGAAAAGAGACGCAAATGGCACTTCAATTTCCAGTGCCGGTACCACCATGCTCGACCAAGACCCCAACACCACCCACCACCATGAACCGGCCATCAATGGCGGCAACAACGGCAACGGCGCCACCGCTCAGGACCAAAATCACTTCCACCATAGCGATAGTCAAGCAAACCTTGCTGGGACTAATGggtcatcttcttcatcttg 1019 0.5407 MDITPTAITTAAATATAATATATTGAKSPEPESETPTRIQPAKSLSFSNGVLKRHHPHPHPHHHLHHPLANQSVVVTYKECLKNHAASLGGHALDGCGEFMPSPNATSTDPTSLKCAACGCHRNFHRREPEEPIPTPTTHVIEYQPHHRHHPPPPPAHRSPNSASPPPISSSYYPASAPHMLLALSAGISVPPESTAAPSNHALVSPGTNARKRFRTKFTQDQKDKMLQFAERVGWKMQKKDENLIHEFCNEIGVDRGVLKVWMHNNKNTFGKRDANGTSISSAGTTMLDQDPNTTHHHEPAINGGNNGNGATAQDQNHFHHSDSQANLAGTNGSSSSS 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02147 339 MobiDBLite consensus disorder prediction 144 172 - -
Bva03g02147 339 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 129 IPR006456 -
Bva03g02147 339 Pfam ZF-HD protein dimerisation region 76 130 IPR006456 -
Bva03g02147 339 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 1 296 - -
Bva03g02147 339 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 1 296 - -
Bva03g02147 339 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 269 IPR006455 -
Bva03g02147 339 MobiDBLite consensus disorder prediction 1 43 - -
Bva03g02147 339 Gene3D - 200 272 - -
Bva03g02147 339 SUPERFAMILY Homeodomain-like 204 273 IPR009057 -
Bva03g02147 339 MobiDBLite consensus disorder prediction 273 339 - -
Bva03g02147 339 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 77 129 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02147 Bva-Chr3 18871518 18872973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02147 27 315 ZF-HD Transcription Factor Family AT3G28920 54.098 5.34e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Bva03g02147 ZF-HD_dimer 1.9e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02147 - - qsu:112022185 346.665