Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02124 ATGGAAAATATTTCCTCTAGACCCAGAAAGGAAGATGAACATATTGAATTGCCACCGGGATTTCGATTCCATCCAACAGATGAAGAGCTTATAACTCAGTATCTCTCGCACAAGGTTCTTGACAGCCATTTCTGTGCTAAAGCGATTGGTGAGGTTGATTTGAACAAGCATGAGCCATGGGATTTACCTTGGAGAGCAAAATTGGGTGAAAAAGAGTGGTATTTTTTCTGTGCAAGAGACAGAAAATACCCAACTGGTTTAAGAACAAACAGAGCCACTGATGCTGGCTACTGGAAAGCTACGGGCAAAGACAGAGAGATATACAAAGCAAGGACACTggttggaatgaagaaaactCTGGTTTTCTACAAAGGAAGAGCACCAAAAGGTGAAAAGACCAACTGGGTCATGCATGAATATAGACTAGAAGGCAAACTCTCTGCTTATTATCTACCCAAAACTGCCAAGAATGAGTGGAGTATCTGCAGAGTTTTTCAGAAGAGTTCCGGTGGAAACAAAATTCATCTTGCGGGGATGGCGAGGTTGAGCTCCTTTGGAAAGGAATCTCCTTCTTCGTTCTTGCCTCCGTTAATGGATTCTTCTCCATACAACAGCGAAACAAAAACCACCGGCGGCGAGTTTTCAAACGTGACCTGCTTCTCCGACCCGAGCCCGGCGGCACCGGCACCGGCACCGGCACTGGAGGATCAACAGACACAAGATGACGTAATTGATAGCTTGGAAAATGAAACTCGTATCTTGGCctcttcagcttcttcttcaaacCCCTCTGACATTTCCATTTCCCCTGCCTCACGGAGTTTTCCCAAAACAATTCCAACGGATTCCCATAAATGCCCACAGATGGAAACCGAAATTGGGAATTCCCAGTTTCCAGATTGTTTTCTGATTCAAGATCAGTCCATGCTGAGGATGTTGATTGAAAACCATGGATCCAACACAAAGCAGAATATGAAAACAGAGTTTTCTCGGGACACAGACTATGATGCTGATATCTCCTCTGTCATATACAACAATGGAATGAATCAAAGATCATTTGACAATCAAGGAGCCGGACCTCTAGACATTGGTTGCCTTTGGAATTACTA 1109 0.4256 MENISSRPRKEDEHIELPPGFRFHPTDEELITQYLSHKVLDSHFCAKAIGEVDLNKHEPWDLPWRAKLGEKEWYFFCARDRKYPTGLRTNRATDAGYWKATGKDREIYKARTLVGMKKTLVFYKGRAPKGEKTNWVMHEYRLEGKLSAYYLPKTAKNEWSICRVFQKSSGGNKIHLAGMARLSSFGKESPSSFLPPLMDSSPYNSETKTTGGEFSNVTCFSDPSPAAPAPAPALEDQQTQDDVIDSLENETRILASSASSSNPSDISISPASRSFPKTIPTDSHKCPQMETEIGNSQFPDCFLIQDQSMLRMLIENHGSNTKQNMKTEFSRDTDYDADISSVIYNNGMNQRSFDNQGAGPLDIGCLWNY 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02124 369 MobiDBLite consensus disorder prediction 214 239 - -
Bva03g02124 369 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 334 - -
Bva03g02124 369 MobiDBLite consensus disorder prediction 255 284 - -
Bva03g02124 369 Pfam No apical meristem (NAM) protein 18 142 IPR003441 GO:0003677|GO:0006355
Bva03g02124 369 ProSiteProfiles NAC domain profile. 17 167 IPR003441 GO:0003677|GO:0006355
Bva03g02124 369 PANTHER NAC DOMAIN-CONTAINING PROTEIN 92-LIKE 10 334 - -
Bva03g02124 369 SUPERFAMILY NAC domain 14 167 IPR036093 GO:0003677|GO:0006355
Bva03g02124 369 Gene3D NAC domain 26 170 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02124 Bva-Chr3 18721404 18723056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02124 15 369 NAC Transcription Factor Family AT5G07680 52.632 2.28e-118 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva03g02124 NAM 4.3e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02124 - - vvi:100250998 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02124 03 18721404 18723056 Bva03g02124 03 18721404 18723056 ECH
Bva03g02124 03 18721404 18723056 Bva04g00294 04 1788258 1789812 ECH