Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02120 ATGGAGGGATCCTTGGGTGTGAGAAAAGGTGCGTGGAGCAAAGAAGAGGATGATCTTCTTAGAGCTTGCATTCAACGGTACGGAGAGGGCAGTTGGAACCTCATTCCTCAAAGAGCAGGGTTGAATCGGTGCCGAAAAAGTTGCAGACTTAGATGGTTAAACTATCTGAAACCAGCAATTAGGAGGGGAAACTTTGCTGAAGATGAAGTAGATATAATTATAAGGTTGCACAAACTCTTGGGAAACAGATGGACATTGATTGCTGGAAGAATACCTGGAAGAACAGCAAATGATGTAAAGAACTTTTGGAACACATACATGCGCAGGAAGagtgaagaaaaggaaaaacgaAAAGAAGCCATGATACCCCACGAAGTATTAAAGCCTCAACCTCGGACCTTGtcaaaaatttctcttcgCTTGGGAGGGAAACAAACTGGTGAATATCATAACAGTGCCGAACAGTGCAGCACTGAAGCATATGCAGCCCCACCACTGCAGTTTCCAGAGAATTGGTCAGATAATTGGTTGGAAAGCTTGTTGGAGGAACTGGGAAGTTGCACATGCGAGGGGAATGGCTCTTGCTGTTCATGCACACAAGAAGAAACCCTCAGGCTTGATCTCTGGGATGAGGAACTCATCAATGCAACGGGGACATA 659 0.431 MEGSLGVRKGAWSKEEDDLLRACIQRYGEGSWNLIPQRAGLNRCRKSCRLRWLNYLKPAIRRGNFAEDEVDIIIRLHKLLGNRWTLIAGRIPGRTANDVKNFWNTYMRRKSEEKEKRKEAMIPHEVLKPQPRTLSKISLRLGGKQTGEYHNSAEQCSTEAYAAPPLQFPENWSDNWLESLLEELGSCTCEGNGSCCSCTQEETLRLDLWDEELINATGT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02120 219 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Bva03g02120 219 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 6 136 - -
Bva03g02120 219 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Bva03g02120 219 Gene3D - 64 136 - -
Bva03g02120 219 CDD SANT 64 107 IPR001005 -
Bva03g02120 219 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 136 - -
Bva03g02120 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Bva03g02120 219 CDD SANT 11 56 IPR001005 -
Bva03g02120 219 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Bva03g02120 219 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Bva03g02120 219 SMART sant 8 58 IPR001005 -
Bva03g02120 219 SMART sant 61 109 IPR001005 -
Bva03g02120 219 Gene3D - 9 61 - -
Bva03g02120 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 56 IPR017930 -
Bva03g02120 219 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02120 Bva-Chr3 18659795 18661679 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02120 2 135 MYB Transcription Factor Family AT1G66370 58.219 1.24e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva03g02120 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02120 - K09422 gmx:100780023 236.113