Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02108 atgggaaggaagagaaagagtgTTGAAGCAgtagaagaagagagaaaatcaaGTGAGGGAAGCATGGCATGGGATGAGATGGTGAAAGAAGCAGCAGCACTGGGAGGAAGAAGAACCCGGAAAAGATTTGTTGGGGTGAGGCAAAGGCCGTCTGGAAGATGGGTAGCTGAGATAAAAGATACAATCCAGAAGATAAGAGTGTGGTTAGGCACTTTTGATACAGCTGAGGAAGCAGCTAGAGCTTATGATGAGGCTGCTTGCTTGCTTCGAGGCGCCAACACAAGGACAAACTTCTGGCCTTGTTCTCAGCCATCATCAACTCCTGCTCTTCCCTCAAAGATCACCAATCTCCTCCTTCAAAGGCTTAAAGCAAGGAACAATGAAGCTTCCTCTTCTGATTCCTCCCCCAACTCTCTTCTCATCAACCAGCAGCAGCAAAAGCAGGAAGCAGATGAATATTCATATGGGCAAGTGTCAACTGATTTCTCAATTGATCAGTTCACTGATTTTCTCAATGATCCTGAAGATTACAGCACAAGCAACAACGAGTTCATCAACAATAGTGCACGGATCGATTACATTACAAGCAGTTTTGAATCATGTTTAACTGGAAATGATGACTGCAGGGAAAGGGAAGAAGTGGGCTTGGAAAATAGTTGCAGTAATGTGACAGAAACATCAAGTCCTGACTGCAGCAATTCAGGAGGGGAAAGATCAGAGGTGGACAGTGAAGAAGAAAGCACTGATCATCTGGGTATCCTGGATTTTCAGTTTCTGGACAATGTTGCTCCATCATCTTACTATTCTCCTTTCGAGATGGCTGAAGAGATCGAGGAGCCTGTAGAGCCTGAGAATTATGCTGATGAGCCTGCAATGCTCAGAGCTGCCATGAAGAGGATGAAATATGAGAGGAAATTCTCAGCTTCCCTCTATGCCTTCAATGGGATAACTGAATGCCTAAAGTTGAAACTGGGATCAGGAAACTTGAGTGGAAGAGGAATTTCTGATCATCTAACCAACCTCAAGATGGCATGcaacaagaacaaaattgaagagaagaaagaggaagagaacCCACAAACACCAACTGACATGgactcttcttcttcatcatcatccagTGTTGATGGAGAACTGTTATTGTGGAATTCACTGGATCTTCCTCCCATATGCTATGTTAATTA 1184 0.4029 MGRKRKSVEAVEEERKSSEGSMAWDEMVKEAAALGGRRTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQPSSTPALPSKITNLLLQRLKARNNEASSSDSSPNSLLINQQQQKQEADEYSYGQVSTDFSIDQFTDFLNDPEDYSTSNNEFINNSARIDYITSSFESCLTGNDDCREREEVGLENSCSNVTETSSPDCSNSGGERSEVDSEEESTDHLGILDFQFLDNVAPSSYYSPFEMAEEIEEPVEPENYADEPAMLRAAMKRMKYERKFSASLYAFNGITECLKLKLGSGNLSGRGISDHLTNLKMACNKNKIEEKKEEENPQTPTDMDSSSSSSSSVDGELLLWNSLDLPPICYVN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02108 394 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 3 343 - -
Bva03g02108 394 MobiDBLite consensus disorder prediction 125 154 - -
Bva03g02108 394 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 MobiDBLite consensus disorder prediction 351 375 - -
Bva03g02108 394 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 343 - -
Bva03g02108 394 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Bva03g02108 394 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Bva03g02108 394 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 MobiDBLite consensus disorder prediction 216 247 - -
Bva03g02108 394 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Bva03g02108 394 MobiDBLite consensus disorder prediction 1 22 - -
Bva03g02108 394 MobiDBLite consensus disorder prediction 217 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02108 Bva-Chr3 18569955 18571139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02108 40 118 AP2-EREBP Transcription Factor Family AT5G19790 72.152 1.37e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva03g02108 AP2 7.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02108 K09286 - gmx:100790398 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02108 03 18569955 18571139 Bva03g02108 03 18569955 18571139 ECH