Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02107 ATGGATGGATCAACTGGCCGGGGTGGCACTGGTGTGGACATGTTTTTACCAAATTATAAGTTGGGAAAAACACTTGGGATCGGATCCTTTGGCAAGGTTAAAATTGCAGAGCATGTACTAACTGGTCATAAAGTTGCCATTAAGATTCTGAACCGCCGCAAGATAAGGAACatggaaatggaagaaaaagTGagaagagaaatcaaaattttaaggttgTTCATGCATCCTCACATTATACGGCTTTATGAGGTAGTAGAAACACCAACAGACATATTTGTTGTTATGGAGTATGTCAAATCTGGAGAGCTCTTTGACTACATAGTAGAGAAGGGTAGGTTGCAAGAAGATGAAGCTCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGGAATATGGTGGTCCATAGAGACTTGAAGCCTGAGAATTTACTTTTGGACTCCAAATGCAATGTGAAGATTGCTGATTTTGGGTTAAGCAATATCATGCGTGATGGTCATTTTCTGAAGACTAGTTGTGGTAGCCCAAACTATGCTGCTCCAGAGGTTATCTCTGGGAAATTGTATGCTGGACCTGAGGTAGATGTCTGGAGTTGTGGTGTGATTTTATATGCTCTTCTTTGTGGAACCCTTCcttttgatgatgaaaacaTTCCAAATctctttaagaaaataaagGGTGGGATTTATACTCTTCCAAGTCATCTGTCGCTTGGTGCTAGAGATTTAATACCAAGGATGCTTGTGGTAGATCCTATGAAGAGGATGACCATACCTGAGATCTGCCAACATCCATGGTTCCAAGCTCATCTCCCGCGTTATTTAGCGGTCCCACCACCAGATACAATGCAACAAGCCAAAAAGATTGATGAGGAGATTCTTCAAGAAGTGGTTAATATGGGATTTGACAGGAACCAGTTGGTTGAATCTCTTCGCAACAGGATACAAAATGAGGGTACTGTAGCATACTATTTGTTATTGGACAATCGGTTCCGTGTTTCCTCCGGCTATCTTGGAGCTGAGTTTCAAGAAACTGTGGAATGTGGTTATAATCGTATGCATCCCAGTGAAGTTGCTGCTCCAGCAGTTGGACATCGCATTTCAGGGTACATGGATTATCAAGGAGTTGGAGCAAGATCGCAGTATCCTGTTGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGAGCACATCCTCGTGAAATAATGACTGAGGTCCTTAAAGCACTGCAAGAGTTAAATGTGTGTTGGAAGAAGATTGGACACTACAACATGAAGTGTAGGTGGATTGCTGGCATTCCTGAAGGAATGGTTAATAATGCCGTGCATAGTAATCATTACTTTGGAGACGACTCTGTCATTATCGAGAATGATGCTGTTTCTAAGTCAAATGtggtcaagtttgaagtgCAGCTTTACAAAACTCGCGACGAGAAGTACCTGCTTGATCTTCAAAGGGTCCAGGGCCCTCAGTTTCTCTTCTTGGATCTTTGTGCTGCTTTCCTTGCACAGCTTCGTGTCCTCTA 1535 0.4052 MDGSTGRGGTGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIRNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIFVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSLGARDLIPRMLVVDPMKRMTIPEICQHPWFQAHLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSSGYLGAEFQETVECGYNRMHPSEVAAPAVGHRISGYMDYQGVGARSQYPVERKWALGLQSRAHPREIMTEVLKALQELNVCWKKIGHYNMKCRWIAGIPEGMVNNAVHSNHYFGDDSVIIENDAVSKSNVVKFEVQLYKTRDEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02107 511 Pfam UBA/TS-N domain 293 329 IPR015940 -
Bva03g02107 511 SMART serkin_6 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g02107 511 CDD AMPKA_C 389 508 - -
Bva03g02107 511 SUPERFAMILY Protein kinase-like (PK-like) 16 287 IPR011009 -
Bva03g02107 511 SUPERFAMILY KA1-like 328 510 IPR028375 -
Bva03g02107 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Bva03g02107 511 Gene3D Kinase associated domain 1, KA1 395 509 - -
Bva03g02107 511 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515
Bva03g02107 511 Pfam Kinase associated domain 1 468 510 IPR001772 -
Bva03g02107 511 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 462 510 IPR001772 -
Bva03g02107 511 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
Bva03g02107 511 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524
Bva03g02107 511 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 8 510 - -
Bva03g02107 511 CDD STKc_AMPK_alpha 16 271 - -
Bva03g02107 511 CDD UBA_SnRK1_plant 293 333 - -
Bva03g02107 511 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g02107 511 SMART uba_6 294 331 IPR015940 -
Bva03g02107 511 Gene3D Transferase(Phosphotransferase) domain 1 10 349 - -
Bva03g02107 511 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva03g02107 511 PANTHER SERINE/THREONINE KINASE 8 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02107 Bva-Chr3 18562228 18568934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g02107 19 272 CBL-interacting serine-threonine protein kinases AT2G26980 53.307 1.89e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Bva03g02107 Pkinase 6.2e-80 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02107 K07198 - gmx:100796687 957.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g02107 03 18562228 18568934 Bva03g02107 03 18562228 18568934 ECH